Variant report

Variant	rs10828231
Chromosome Location	chr10:21587496-21587497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21580744..21583454-chr10:21586325..21588483,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10828232	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012641	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012644	1.00[JPT][hapmap]
rs11012652	1.00[ASN][1000 genomes]
rs11813176	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11813592	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12244309	0.80[CEU][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes]
rs13376927	0.82[EUR][1000 genomes]
rs16921717	0.82[EUR][1000 genomes]
rs16921726	1.00[JPT][hapmap]
rs2293438	0.91[CEU][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56958459	0.93[EUR][1000 genomes]
rs61055947	0.82[EUR][1000 genomes]
rs7922927	0.81[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21583400-21593000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:21583600-21587600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:21583600-21588400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:21583600-21588600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:21586000-21588600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:21586000-21589000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:21586200-21587600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:21586200-21587600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:21586200-21588600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:21586400-21588400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:21586400-21588600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr10:21586400-21603000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:21587200-21588400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:21587200-21588400	Weak transcription	Placenta	Placenta
15	chr10:21587200-21590000	Enhancers	A549	lung
16	chr10:21587400-21588400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:21587400-21588400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:21587400-21589600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:21587400-21589600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:21587400-21593000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:21587400-21602800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:21587400-21603000	Weak transcription	Fetal Kidney	kidney

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