Variant report

Variant	rs12252084
Chromosome Location	chr10:21567190-21567191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21562312..21564051-chr10:21566271..21567877,2	K562	blood:
2	chr10:21566105..21568881-chr10:21783134..21785349,2	MCF-7	breast:
3	chr10:21566287..21568979-chr10:21785002..21786704,2	MCF-7	breast:
4	chr10:21567039..21568307-chr10:21783578..21784351,3	MCF-7	breast:
5	chr10:21560918..21562643-chr10:21566153..21567946,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222071	Chromatin interaction
ENSG00000204682	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10828230	1.00[JPT][hapmap]
rs11012633	0.90[CEU][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs11012644	0.82[JPT][hapmap]
rs12247067	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs12259097	0.81[ASN][1000 genomes]
rs12262659	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21558200-21567600	Weak transcription	Ovary	ovary
2	chr10:21560200-21567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:21560400-21567600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:21560400-21567800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:21560400-21567800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:21560800-21567200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:21561800-21574200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:21562200-21568000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:21562400-21567600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:21562600-21567400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:21562600-21567800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:21562800-21567400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:21562800-21578000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:21563200-21574400	Weak transcription	Hela-S3	cervix
15	chr10:21564200-21581600	Weak transcription	Right Atrium	heart
16	chr10:21564600-21567600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:21564600-21569200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:21566200-21567600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:21566200-21567800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:21566200-21567800	Weak transcription	HMEC	breast
21	chr10:21566400-21570600	Enhancers	A549	lung
22	chr10:21567000-21571600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:21567000-21576600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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