Variant report

Variant	rs12259097
Chromosome Location	chr10:21575028-21575029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21574677..21577068-chr10:21785506..21787018,2	K562	blood:
2	chr10:21454585..21456960-chr10:21573325..21576273,2	K562	blood:
3	chr10:21573800..21576444-chr10:21582044..21583785,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12252084	0.81[ASN][1000 genomes]
rs13377089	0.81[EUR][1000 genomes]
rs28476641	1.00[AFR][1000 genomes]
rs55638725	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21562800-21578000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:21564200-21581600	Weak transcription	Right Atrium	heart
3	chr10:21567000-21576600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:21567400-21582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:21568200-21578200	Weak transcription	Fetal Lung	lung
6	chr10:21568200-21579200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:21568200-21580400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:21568200-21581600	Weak transcription	Ovary	ovary
9	chr10:21569800-21576000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:21570200-21580400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:21571000-21575200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:21571000-21576400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:21571400-21575400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:21571600-21575200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:21571600-21583000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:21573200-21576600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:21573400-21575800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:21573600-21575600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:21573800-21575200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:21573800-21576200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:21573800-21576400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:21574200-21575400	Enhancers	HUVEC	blood vessel
23	chr10:21574400-21575200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:21574400-21575200	Enhancers	NHDF-Ad	bronchial
25	chr10:21574800-21575200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr10:21574800-21578000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:21575000-21576000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:21575000-21577000	Enhancers	A549	lung
29	chr10:21575000-21578200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:21575000-21578600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:21575000-21581000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:21575000-21581800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links