Variant report

Variant	rs7091815
Chromosome Location	chr10:21639837-21639838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21639391..21642314-chr10:21643297..21645192,2	MCF-7	breast:
2	chr10:21629419..21631045-chr10:21637686..21640023,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10828238	0.84[ASN][1000 genomes]
rs11012681	0.84[ASN][1000 genomes]
rs12245880	0.84[ASN][1000 genomes]
rs12269541	0.83[EUR][1000 genomes]
rs2039027	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2039028	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4381272	0.84[ASN][1000 genomes]
rs4448595	0.84[ASN][1000 genomes]
rs58809874	0.84[ASN][1000 genomes]
rs7068408	0.84[ASN][1000 genomes]
rs7086407	0.84[ASN][1000 genomes]
rs7098605	0.84[AMR][1000 genomes]
rs7898040	0.84[ASN][1000 genomes]
rs7913493	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7923649	0.82[AMR][1000 genomes]
rs7923849	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21638600-21640000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:21638600-21640200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:21638800-21640000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:21638800-21640000	Enhancers	Fetal Stomach	stomach
5	chr10:21638800-21640000	Enhancers	HUVEC	blood vessel
6	chr10:21638800-21640000	Enhancers	NHDF-Ad	bronchial
7	chr10:21638800-21640200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:21638800-21641600	Enhancers	Placenta	Placenta
9	chr10:21639400-21640000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:21639400-21644800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:21639400-21644800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:21639600-21640000	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:21639600-21640000	Enhancers	A549	lung
14	chr10:21639600-21640400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:21639600-21643800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:21639600-21644000	Weak transcription	HMEC	breast
17	chr10:21639600-21644200	Weak transcription	NHEK	skin
18	chr10:21639600-21644600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:21639600-21644600	Weak transcription	Osteobl	bone
20	chr10:21639600-21650800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:21639600-21650800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:21639600-21652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:21639800-21640200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:21639800-21644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:21639800-21644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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