Variant report

Variant	rs12269541
Chromosome Location	chr10:21681278-21681279
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2039027	0.83[EUR][1000 genomes]
rs2039028	0.83[EUR][1000 genomes]
rs35776386	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7091815	0.83[EUR][1000 genomes]
rs7904562	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7913493	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:21678000-21683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:21678200-21681400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21678200-21683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:21678200-21692000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:21680200-21681400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:21680200-21687200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:21680400-21683400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:21680400-21684200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:21681200-21681600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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