Variant report

Variant	rs11594403
Chromosome Location	chr10:98365912-98365913
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98345342..98348493-chr10:98363756..98366724,3	K562	blood:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10736113	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs10748684	0.88[EUR][1000 genomes]
rs10748685	0.88[EUR][1000 genomes]
rs10786302	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10786303	0.88[EUR][1000 genomes]
rs10786304	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs11188835	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs11188849	0.88[EUR][1000 genomes]
rs11188850	0.86[EUR][1000 genomes]
rs11591933	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap]
rs11592156	1.00[EUR][1000 genomes]
rs11596148	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs11598142	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11599054	0.88[EUR][1000 genomes]
rs12247652	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17391197	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[YRI][hapmap]
rs17392013	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs2861626	0.88[EUR][1000 genomes]
rs3789955	1.00[ASW][hapmap]
rs4919039	0.88[EUR][1000 genomes]
rs61858218	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6584088	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7072865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs7073125	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7073735	0.87[EUR][1000 genomes]
rs7093849	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7100639	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap]
rs744363	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7893530	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv895909	chr10:98354924-98382165	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
2	chr10:98349800-98366400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:98349800-98367800	Weak transcription	Small Intestine	intestine
4	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:98352400-98378600	Strong transcription	Liver	Liver
6	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:98352600-98369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:98353000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:98354600-98388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:98354800-98370600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:98356200-98367200	Weak transcription	Colonic Mucosa	Colon
14	chr10:98357600-98369200	Weak transcription	HepG2	liver
15	chr10:98357800-98382000	Strong transcription	GM12878-XiMat	blood
16	chr10:98358600-98370400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:98358800-98369600	Weak transcription	Gastric	stomach
18	chr10:98359400-98373400	Weak transcription	Right Ventricle	heart
19	chr10:98359800-98366000	Weak transcription	Fetal Heart	heart
20	chr10:98360400-98366200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:98360400-98392800	Weak transcription	Thymus	Thymus
22	chr10:98360600-98367400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:98360800-98369400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:98362200-98369000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:98362200-98389200	Strong transcription	Primary B cells from cord blood	blood
26	chr10:98362600-98367600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:98362600-98373600	Weak transcription	Lung	lung
28	chr10:98362800-98366200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:98363000-98367200	Weak transcription	Stomach Mucosa	stomach
30	chr10:98363200-98366000	Weak transcription	Spleen	Spleen
31	chr10:98363400-98366000	Weak transcription	Pancreas	Pancrea
32	chr10:98363800-98392600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:98364600-98366000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:98364800-98367600	Enhancers	Placenta	Placenta
35	chr10:98365600-98374200	Enhancers	Fetal Intestine Large	intestine
36	chr10:98365600-98374400	Enhancers	Fetal Intestine Small	intestine
37	chr10:98365800-98366000	Active TSS	Hela-S3	cervix
38	chr10:98365800-98366000	Enhancers	NH-A	brain
39	chr10:98365800-98366200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr10:98365800-98366200	Enhancers	HSMM	muscle
41	chr10:98365800-98366200	Enhancers	HSMMtube	muscle
42	chr10:98365800-98366400	Enhancers	Fetal Muscle Leg	muscle
43	chr10:98365800-98369800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:98365800-98370000	Enhancers	Ovary	ovary

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