Variant report

Variant	rs11188835
Chromosome Location	chr10:98334340-98334341
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10736113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10748682	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10748683	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10786302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10786304	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs11591933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11592108	0.92[EUR][1000 genomes]
rs11592969	0.94[EUR][1000 genomes]
rs11594403	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs11596148	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11598142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17391197	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17392013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2902003	0.86[ASN][1000 genomes]
rs4919030	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55822182	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60471672	0.92[EUR][1000 genomes]
rs61858493	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61858555	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61858556	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6584088	0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs7072865	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7073125	1.00[CEU][hapmap]
rs7093849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7100639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7893530	0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs7897721	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7923910	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11188835	NDUFB8	cis	parietal	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
3	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
5	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
6	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
7	chr10:98307800-98341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:98314400-98345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:98319200-98338400	Weak transcription	Colonic Mucosa	Colon
10	chr10:98320200-98344800	Weak transcription	HSMMtube	muscle
11	chr10:98320400-98341600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:98321800-98336800	Weak transcription	HMEC	breast
13	chr10:98322200-98343400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:98323000-98339600	Weak transcription	K562	blood
15	chr10:98323200-98334400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:98324000-98338000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:98324200-98334400	Weak transcription	Fetal Thymus	thymus
18	chr10:98324400-98339600	Weak transcription	Adipose Nuclei	Adipose
19	chr10:98324600-98334600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:98324600-98334800	Weak transcription	NH-A	brain
21	chr10:98324600-98345000	Weak transcription	Fetal Kidney	kidney
22	chr10:98325200-98336200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:98326000-98336000	Weak transcription	NHLF	lung
24	chr10:98326200-98334600	Weak transcription	Osteobl	bone
25	chr10:98326400-98338400	Weak transcription	Brain Anterior Caudate	brain
26	chr10:98326400-98339000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:98326600-98336200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:98326600-98341600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:98326800-98336400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:98326800-98336600	Weak transcription	Primary T cells from cord blood	blood
31	chr10:98327200-98337200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:98327600-98339600	Weak transcription	Thymus	Thymus
33	chr10:98327600-98339800	Weak transcription	Right Atrium	heart
34	chr10:98327800-98334400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:98327800-98336200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:98328000-98343200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:98328200-98334600	Weak transcription	Placenta	Placenta
38	chr10:98328200-98336400	Weak transcription	A549	lung
39	chr10:98328200-98341400	Weak transcription	NHDF-Ad	bronchial
40	chr10:98328800-98334600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:98328800-98335600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:98328800-98336400	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:98328800-98339600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:98328800-98339600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:98328800-98339600	Weak transcription	Fetal Brain Female	brain
46	chr10:98329000-98339800	Weak transcription	Lung	lung
47	chr10:98329200-98334400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:98329200-98336200	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:98329200-98336800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:98329200-98345000	Weak transcription	Fetal Stomach	stomach

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