Variant report

Variant	rs61858493
Chromosome Location	chr10:98271658-98271659
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98155318..98156359-chr10:98270559..98271887,7	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10736113	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10748682	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10748683	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10786302	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188835	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11591933	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11592108	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11592969	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11598142	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17391197	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17392013	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4919030	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55822182	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60471672	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61858555	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61858556	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7093849	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7100639	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7897721	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7923910	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98266400-98272200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:98267000-98272200	Weak transcription	Pancreas	Pancrea
3	chr10:98267600-98272000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98268400-98272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:98269400-98271800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:98269400-98272400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:98269400-98272400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:98270600-98272000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr10:98270600-98272000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr10:98270800-98271800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr10:98271000-98272000	Enhancers	NH-A	brain
12	chr10:98271000-98272000	Enhancers	NHEK	skin
13	chr10:98271000-98272200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:98271000-98272200	Enhancers	Left Ventricle	heart
15	chr10:98271200-98272000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr10:98271200-98272000	Bivalent Enhancer	HepG2	liver
17	chr10:98271200-98272200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:98271200-98272200	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr10:98271400-98271800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:98271400-98271800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr10:98271400-98272000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr10:98271400-98272000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:98271400-98272000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:98271400-98272200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
25	chr10:98271400-98272200	Enhancers	Brain Cingulate Gyrus	brain
26	chr10:98271400-98272400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
27	chr10:98271400-98272400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr10:98271400-98272400	Enhancers	Fetal Heart	heart
29	chr10:98271400-98272400	Bivalent Enhancer	Stomach Mucosa	stomach
30	chr10:98271600-98271800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:98271600-98271800	Enhancers	HSMM	muscle
32	chr10:98271600-98272000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:98271600-98272200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
34	chr10:98271600-98272200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:98271600-98272200	Enhancers	Brain Anterior Caudate	brain
36	chr10:98271600-98272200	Enhancers	Brain Hippocampus Middle	brain
37	chr10:98271600-98272400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:98271600-98272400	Weak transcription	HSMMtube	muscle

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