Variant report

Variant	rs7897721
Chromosome Location	chr10:98276507-98276508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98276070-98276534	GM12892	blood:	n/a	n/a
2	POLR2A	chr10:98275700-98276541	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr10:98276033-98276633	GM12891	blood:	n/a	n/a
4	POLR2A	chr10:98276171-98276507	K562	blood:	n/a	n/a
5	POLR2A	chr10:98274761-98279712	HepG2	liver:	n/a	n/a
6	FOSL2	chr10:98275776-98276573	HepG2	liver:	n/a	n/a
7	POLR2A	chr10:98276072-98276566	HepG2	liver:	n/a	n/a
8	POLR2A	chr10:98276093-98276528	GM12891	blood:	n/a	n/a
9	POLR2A	chr10:98276366-98276540	K562	blood:	n/a	n/a
10	POLR2A	chr10:98274807-98276631	PFSK-1	brain:	n/a	n/a
11	POLR2A	chr10:98275860-98276700	HL-60	blood:	n/a	n/a
12	NFATC1	chr10:98275816-98276610	GM12878	blood:	n/a	n/a
13	POLR2A	chr10:98276126-98276508	HepG2	liver:	n/a	n/a
14	POLR2A	chr10:98273498-98281377	K562	blood:	n/a	n/a
15	NFATC1	chr10:98275786-98276559	GM12878	blood:	n/a	n/a
16	POLR2A	chr10:98276015-98276604	GM12878	blood:	n/a	n/a
17	POLR2A	chr10:98276021-98276700	GM12892	blood:	n/a	n/a
18	POLR2A	chr10:98275895-98276652	GM12891	blood:	n/a	n/a
19	POLR2A	chr10:98276399-98276954	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr10:98275665-98276675	PANC-1	pancreas:	n/a	n/a
21	POLR2A	chr10:98276059-98276588	HL-60	blood:	n/a	n/a
22	POLR2A	chr10:98274770-98278497	A549	lung:	n/a	n/a
23	MTA3	chr10:98275959-98276534	GM12878	blood:	n/a	n/a
24	POLR2A	chr10:98274907-98276544	K562	blood:	n/a	n/a
25	POLR2A	chr10:98272897-98276825	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr10:98275835-98277678	GM12891	blood:	n/a	n/a
27	POLR2A	chr10:98276077-98276533	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:98275887..98277539-chr10:98291073..98293689,2	K562	blood:
2	chr10:98272300..98275600-chr10:98276327..98279509,5	MCF-7	breast:
3	chr10:98275547..98277639-chr10:98319561..98321420,2	K562	blood:

No data

Variant related genes	Relation type
TLL2	TF binding region
ENSG00000235677	Chromatin interaction
ENSG00000095587	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736113	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748682	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748683	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748684	1.00[ASN][1000 genomes]
rs10748685	1.00[ASN][1000 genomes]
rs10786302	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786303	1.00[ASN][1000 genomes]
rs10786304	1.00[ASN][1000 genomes]
rs11188835	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188849	1.00[ASN][1000 genomes]
rs11188850	1.00[ASN][1000 genomes]
rs11591933	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592108	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592156	1.00[ASN][1000 genomes]
rs11592969	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598142	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599054	1.00[ASN][1000 genomes]
rs12247652	1.00[ASN][1000 genomes]
rs17391197	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17392013	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861626	1.00[ASN][1000 genomes]
rs4919030	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919039	1.00[ASN][1000 genomes]
rs55822182	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60471672	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858218	1.00[ASN][1000 genomes]
rs61858493	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61858555	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858556	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072865	1.00[ASN][1000 genomes]
rs7073125	1.00[ASN][1000 genomes]
rs7073735	1.00[ASN][1000 genomes]
rs7093849	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100639	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744363	1.00[ASN][1000 genomes]
rs7923910	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912485	1.00[ASN][1000 genomes]
rs912486	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274000-98282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:98274000-98285800	Weak transcription	Aorta	Aorta
3	chr10:98274200-98277200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:98274200-98277400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:98274200-98277600	Weak transcription	NH-A	brain
6	chr10:98274200-98280400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:98274200-98280600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:98274200-98281400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:98274200-98284600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:98274200-98285400	Weak transcription	Colonic Mucosa	Colon
11	chr10:98274200-98285600	Weak transcription	Gastric	stomach
12	chr10:98274200-98285600	Weak transcription	Left Ventricle	heart
13	chr10:98274200-98285600	Weak transcription	Lung	lung
14	chr10:98274200-98285600	Weak transcription	Ovary	ovary
15	chr10:98274200-98285600	Weak transcription	Right Ventricle	heart
16	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
20	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:98274400-98277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:98274400-98278000	Weak transcription	Liver	Liver
23	chr10:98274400-98278000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:98274400-98280000	Weak transcription	HMEC	breast
25	chr10:98274400-98280200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:98274400-98280400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:98274400-98280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:98274400-98280400	Weak transcription	Placenta	Placenta
29	chr10:98274400-98280400	Weak transcription	NHLF	lung
30	chr10:98274400-98280600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:98274400-98280600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:98274400-98280800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:98274400-98280800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:98274400-98281200	Weak transcription	NHEK	skin
35	chr10:98274400-98281600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:98274400-98281600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:98274400-98285000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:98274400-98285000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:98274400-98285000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:98274400-98285600	Weak transcription	Brain Angular Gyrus	brain
41	chr10:98274400-98285600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:98274400-98285600	Weak transcription	Spleen	Spleen
43	chr10:98274400-98285800	Weak transcription	Brain Substantia Nigra	brain
44	chr10:98274400-98286000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr10:98274400-98287200	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:98274400-98287200	Weak transcription	K562	blood
47	chr10:98274400-98288400	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:98274600-98276800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:98274600-98277800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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