Variant report

Variant	rs11592108
Chromosome Location	chr10:98291627-98291628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98287244..98289684-chr10:98290706..98293303,2	MCF-7	breast:
2	chr10:98290286..98292341-chr10:98797201..98799165,2	K562	blood:
3	chr10:98290165..98292762-chr10:98311433..98313883,2	MCF-7	breast:
4	chr10:98275887..98277539-chr10:98291073..98293689,2	K562	blood:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736113	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748682	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748683	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748684	1.00[ASN][1000 genomes]
rs10748685	1.00[ASN][1000 genomes]
rs10786302	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786303	1.00[ASN][1000 genomes]
rs10786304	1.00[ASN][1000 genomes]
rs11188835	0.92[EUR][1000 genomes]
rs11188849	1.00[ASN][1000 genomes]
rs11188850	1.00[ASN][1000 genomes]
rs11591933	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592156	1.00[ASN][1000 genomes]
rs11592969	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598142	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599054	1.00[ASN][1000 genomes]
rs12247652	1.00[ASN][1000 genomes]
rs17391197	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17392013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861626	1.00[ASN][1000 genomes]
rs4919030	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919039	1.00[ASN][1000 genomes]
rs55822182	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60471672	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858218	1.00[ASN][1000 genomes]
rs61858493	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61858555	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858556	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072865	1.00[ASN][1000 genomes]
rs7073125	1.00[ASN][1000 genomes]
rs7073735	1.00[ASN][1000 genomes]
rs7093849	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100639	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744363	1.00[ASN][1000 genomes]
rs7897721	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923910	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912485	1.00[ASN][1000 genomes]
rs912486	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
5	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:98275600-98292400	Weak transcription	Stomach Mucosa	stomach
9	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:98277200-98295200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:98277400-98293400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:98277800-98293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:98277800-98295800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:98278000-98293200	Strong transcription	Liver	Liver
19	chr10:98278000-98293400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr10:98278000-98295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:98278400-98295200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr10:98278600-98318800	Weak transcription	Small Intestine	intestine
23	chr10:98279000-98292200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr10:98279000-98293000	Strong transcription	Dnd41	blood
25	chr10:98280400-98295400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:98280400-98295800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:98282400-98294000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:98283200-98300600	Weak transcription	Fetal Stomach	stomach
29	chr10:98283400-98293600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:98283400-98300600	Weak transcription	Fetal Intestine Small	intestine
31	chr10:98284200-98292800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:98284200-98293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:98284200-98294200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr10:98284400-98293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:98284400-98294000	Strong transcription	Fetal Intestine Large	intestine
36	chr10:98284400-98295000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:98284600-98291800	Strong transcription	GM12878-XiMat	blood
38	chr10:98284600-98293000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:98284600-98293200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:98284600-98293200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:98284600-98293600	Strong transcription	Fetal Thymus	thymus
42	chr10:98284600-98293800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr10:98284800-98293400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:98284800-98293400	Strong transcription	Placenta	Placenta
45	chr10:98284800-98293400	Strong transcription	NHDF-Ad	bronchial
46	chr10:98285000-98292800	Strong transcription	Adipose Nuclei	Adipose
47	chr10:98285000-98292800	Strong transcription	HSMMtube	muscle
48	chr10:98285000-98293000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:98285000-98293200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:98285000-98293200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links