Variant report

Variant	rs61858555
Chromosome Location	chr10:98336341-98336342
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98335998..98336782-chr5:14664225..14664966,2	Hela-S3	cervix:
2	chr10:98336275..98339517-chr10:98344498..98348223,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154124	Chromatin interaction
ENSG00000077147	Chromatin interaction
ENSG00000261360	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736113	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748682	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748683	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748684	1.00[ASN][1000 genomes]
rs10748685	1.00[ASN][1000 genomes]
rs10786302	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786303	1.00[ASN][1000 genomes]
rs10786304	1.00[ASN][1000 genomes]
rs11188835	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188849	1.00[ASN][1000 genomes]
rs11188850	1.00[ASN][1000 genomes]
rs11591933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592108	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592156	1.00[ASN][1000 genomes]
rs11592969	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598142	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599054	1.00[ASN][1000 genomes]
rs12247652	1.00[ASN][1000 genomes]
rs17391197	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17392013	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861626	1.00[ASN][1000 genomes]
rs4919030	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919039	1.00[ASN][1000 genomes]
rs55822182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60471672	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858218	1.00[ASN][1000 genomes]
rs61858493	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61858556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072865	1.00[ASN][1000 genomes]
rs7073125	1.00[ASN][1000 genomes]
rs7073735	1.00[ASN][1000 genomes]
rs7093849	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744363	1.00[ASN][1000 genomes]
rs7897721	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923910	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912485	1.00[ASN][1000 genomes]
rs912486	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
3	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
5	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
6	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
7	chr10:98307800-98341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:98314400-98345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:98319200-98338400	Weak transcription	Colonic Mucosa	Colon
10	chr10:98320200-98344800	Weak transcription	HSMMtube	muscle
11	chr10:98320400-98341600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:98321800-98336800	Weak transcription	HMEC	breast
13	chr10:98322200-98343400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:98323000-98339600	Weak transcription	K562	blood
15	chr10:98324000-98338000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:98324400-98339600	Weak transcription	Adipose Nuclei	Adipose
17	chr10:98324600-98345000	Weak transcription	Fetal Kidney	kidney
18	chr10:98326400-98338400	Weak transcription	Brain Anterior Caudate	brain
19	chr10:98326400-98339000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:98326600-98341600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:98326800-98336400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:98326800-98336600	Weak transcription	Primary T cells from cord blood	blood
23	chr10:98327200-98337200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:98327600-98339600	Weak transcription	Thymus	Thymus
25	chr10:98327600-98339800	Weak transcription	Right Atrium	heart
26	chr10:98328000-98343200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:98328200-98336400	Weak transcription	A549	lung
28	chr10:98328200-98341400	Weak transcription	NHDF-Ad	bronchial
29	chr10:98328800-98336400	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:98328800-98339600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:98328800-98339600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:98328800-98339600	Weak transcription	Fetal Brain Female	brain
33	chr10:98329000-98339800	Weak transcription	Lung	lung
34	chr10:98329200-98336800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:98329200-98345000	Weak transcription	Fetal Stomach	stomach
36	chr10:98329200-98345600	Weak transcription	Gastric	stomach
37	chr10:98329800-98337000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:98329800-98344400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:98329800-98345200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:98331200-98338400	Weak transcription	Left Ventricle	heart
41	chr10:98331400-98339800	Weak transcription	Ovary	ovary
42	chr10:98331400-98344200	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:98331400-98344800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:98331600-98341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:98331800-98337000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:98331800-98337600	Weak transcription	Right Ventricle	heart
47	chr10:98331800-98338400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:98331800-98345200	Weak transcription	Fetal Brain Male	brain
49	chr10:98332000-98339400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:98332200-98336400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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