Variant report

Variant	rs7923910
Chromosome Location	chr10:98348430-98348431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98348410-98349195	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr10:98348414-98348644	HepG2	liver:	n/a	n/a
3	POLR2A	chr10:98344907-98348506	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr10:98348340-98351584	GM12878	blood:	n/a	n/a
5	HCFC1	chr10:98345973-98348623	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr10:98348202-98352713	GM12878	blood:	n/a	n/a
7	EBF1	chr10:98348421-98349009	GM12878	blood:	n/a	chr10:98348564-98348575

No.	Distal block	Cell Line	Cell type
1	chr10:98347309..98348851-chr10:98354166..98356679,2	K562	blood:
2	chr10:98306885..98308587-chr10:98348407..98350744,2	K562	blood:
3	chr10:98344586..98349024-chr10:98390080..98394763,4	MCF-7	breast:
4	chr10:98345305..98347952-chr10:98347996..98350457,3	K562	blood:

Variant related genes	Relation type
TM9SF3	TF binding region
ENSG00000155629	Chromatin interaction
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736113	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748682	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748683	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748684	1.00[ASN][1000 genomes]
rs10748685	1.00[ASN][1000 genomes]
rs10786302	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786303	1.00[ASN][1000 genomes]
rs10786304	1.00[ASN][1000 genomes]
rs11188835	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188849	1.00[ASN][1000 genomes]
rs11188850	1.00[ASN][1000 genomes]
rs11591933	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592108	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592156	1.00[ASN][1000 genomes]
rs11592969	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598142	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599054	1.00[ASN][1000 genomes]
rs12247652	1.00[ASN][1000 genomes]
rs17391197	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17392013	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861626	1.00[ASN][1000 genomes]
rs4919030	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919039	1.00[ASN][1000 genomes]
rs55822182	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60471672	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858218	1.00[ASN][1000 genomes]
rs61858493	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61858555	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072865	1.00[ASN][1000 genomes]
rs7073125	1.00[ASN][1000 genomes]
rs7073735	1.00[ASN][1000 genomes]
rs7093849	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744363	1.00[ASN][1000 genomes]
rs7897721	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912485	1.00[ASN][1000 genomes]
rs912486	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98345800-98348600	Active TSS	Psoas Muscle	Psoas
2	chr10:98347000-98354600	Weak transcription	Spleen	Spleen
3	chr10:98347200-98349000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
4	chr10:98347400-98348600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr10:98347400-98348600	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr10:98347400-98348800	Flanking Active TSS	GM12878-XiMat	blood
7	chr10:98347400-98358800	Weak transcription	Pancreas	Pancrea
8	chr10:98347600-98349400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:98347600-98349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:98347800-98348600	Enhancers	Right Ventricle	heart
11	chr10:98347800-98349200	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:98347800-98349400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:98347800-98365800	Weak transcription	Ovary	ovary
14	chr10:98348000-98348600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:98348000-98348600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr10:98348000-98348800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:98348000-98348800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:98348000-98348800	Enhancers	Fetal Lung	lung
19	chr10:98348000-98348800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:98348000-98348800	Enhancers	A549	lung
21	chr10:98348000-98348800	Enhancers	HSMMtube	muscle
22	chr10:98348000-98349000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:98348000-98349000	Weak transcription	Small Intestine	intestine
24	chr10:98348000-98349200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:98348000-98349200	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:98348000-98349200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:98348000-98349200	Enhancers	Brain Anterior Caudate	brain
28	chr10:98348000-98349200	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:98348000-98349200	Enhancers	Hela-S3	cervix
30	chr10:98348000-98349200	Enhancers	HMEC	breast
31	chr10:98348000-98349200	Enhancers	HSMM	muscle
32	chr10:98348000-98349200	Enhancers	NH-A	brain
33	chr10:98348000-98349400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:98348000-98349600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:98348000-98349600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:98348000-98349600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:98348000-98349600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:98348000-98349600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:98348000-98349800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:98348000-98349800	Enhancers	Fetal Intestine Large	intestine
41	chr10:98348000-98349800	Enhancers	Fetal Intestine Small	intestine
42	chr10:98348000-98349800	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr10:98348000-98349800	Enhancers	K562	blood
44	chr10:98348000-98350000	Enhancers	Stomach Mucosa	stomach
45	chr10:98348000-98351200	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:98348000-98354600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
48	chr10:98348200-98348600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:98348200-98348600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:98348200-98348600	Enhancers	Colonic Mucosa	Colon

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