Variant report

Variant	rs11594922
Chromosome Location	chr10:18642730-18642731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10764427	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11592650	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11819342	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17611696	0.85[JPT][hapmap]
rs17684350	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7919793	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18643200	Weak transcription	Left Ventricle	heart
2	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
3	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
4	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
5	chr10:18639800-18651600	Weak transcription	Ovary	ovary
6	chr10:18640400-18647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:18641000-18644200	Enhancers	Fetal Heart	heart
8	chr10:18642400-18643800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:18642600-18642800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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