Variant report

Variant	rs11592650
Chromosome Location	chr10:18632925-18632926
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10764427	0.94[CEU][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11013624	0.85[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs11594922	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11599327	0.85[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs11819342	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17611696	0.82[JPT][hapmap]
rs17684350	0.86[CEU][hapmap];0.82[YRI][hapmap]
rs7919793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18629600-18633000	Active TSS	Fetal Heart	heart
2	chr10:18630000-18633800	Weak transcription	Liver	Liver
3	chr10:18630000-18639200	Weak transcription	Pancreas	Pancrea
4	chr10:18630200-18639200	Weak transcription	Ovary	ovary
5	chr10:18631600-18634800	Weak transcription	Left Ventricle	heart
6	chr10:18632800-18633800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:18632800-18633800	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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