Variant report

Variant	rs11013624
Chromosome Location	chr10:18614995-18614996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10764427	0.82[YRI][hapmap]
rs11592650	0.85[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs11599327	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17611696	1.00[ASW][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs17684350	1.00[YRI][hapmap]
rs4747341	0.96[ASN][1000 genomes]
rs61839208	0.86[ASN][1000 genomes]
rs7894306	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7919793	0.82[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11013624	NMT2	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18614600-18615800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:18614600-18615800	Enhancers	Liver	Liver
3	chr10:18614600-18615800	Enhancers	Ovary	ovary
4	chr10:18614600-18615800	Enhancers	Pancreas	Pancrea
5	chr10:18614800-18615000	Enhancers	Aorta	Aorta
6	chr10:18614800-18615600	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links