Variant report

Variant	rs11595676
Chromosome Location	chr10:45451364-45451365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45443867..45446149-chr10:45450890..45453050,2	MCF-7	breast:
2	chr10:45443163..45445127-chr10:45450865..45453676,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12263146	0.83[EUR][1000 genomes]
rs2183993	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59626742	0.84[EUR][1000 genomes]
rs72780655	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72780658	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs870204	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1035235	chr10:45442303-45467948	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45431200-45453200	Weak transcription	Gastric	stomach
2	chr10:45442400-45453400	Weak transcription	Osteobl	bone
3	chr10:45443400-45454000	Weak transcription	Esophagus	oesophagus
4	chr10:45443800-45453000	Weak transcription	Lung	lung
5	chr10:45443800-45453200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:45443800-45454000	Weak transcription	Psoas Muscle	Psoas
7	chr10:45444000-45451600	Weak transcription	Liver	Liver
8	chr10:45444400-45453600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:45445400-45453000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:45445600-45452800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:45445800-45451400	Weak transcription	Fetal Stomach	stomach
12	chr10:45445800-45453600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:45446000-45453000	Weak transcription	Stomach Mucosa	stomach
14	chr10:45446000-45453600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:45446200-45452400	Weak transcription	Pancreas	Pancrea
16	chr10:45446200-45453200	Weak transcription	Brain Substantia Nigra	brain
17	chr10:45446200-45453600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:45446400-45452200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:45446400-45452800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:45446400-45453200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:45446400-45453600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:45446400-45453800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:45446600-45452200	Weak transcription	GM12878-XiMat	blood
24	chr10:45446800-45451600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:45447000-45453800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:45447200-45452200	Weak transcription	Aorta	Aorta
27	chr10:45447400-45451800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr10:45447600-45453600	Weak transcription	NHLF	lung
29	chr10:45447800-45451400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:45448400-45453600	Weak transcription	HUVEC	blood vessel
31	chr10:45448400-45453800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:45448600-45453200	Weak transcription	Colon Smooth Muscle	Colon
33	chr10:45448600-45453200	Weak transcription	NH-A	brain
34	chr10:45448600-45453600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:45448800-45451400	Weak transcription	Ovary	ovary
36	chr10:45448800-45451800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:45448800-45452000	Weak transcription	Fetal Lung	lung
38	chr10:45448800-45453400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:45448800-45453600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:45448800-45453600	Weak transcription	Primary T cells from cord blood	blood
41	chr10:45448800-45453600	Weak transcription	Brain Angular Gyrus	brain
42	chr10:45448800-45453600	Weak transcription	Brain Anterior Caudate	brain
43	chr10:45448800-45453600	Weak transcription	Fetal Kidney	kidney
44	chr10:45448800-45453600	Weak transcription	NHDF-Ad	bronchial
45	chr10:45448800-45453800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:45448800-45453800	Weak transcription	A549	lung
47	chr10:45448800-45454000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:45448800-45454000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:45448800-45454200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr10:45448800-45454200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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