Variant report

Variant	rs11597237
Chromosome Location	chr10:6079017-6079018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6076656..6079069-chr10:6086121..6089076,2	MCF-7	breast:
2	chr10:6018934..6021377-chr10:6078556..6080537,2	K562	blood:

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11256416	0.97[ASN][1000 genomes]
rs12722489	0.86[AMR][1000 genomes]
rs12722515	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12722523	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12722527	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12722551	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12722553	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12722559	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12722561	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2246031	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41294713	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4625363	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs791590	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs791593	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:6075400-6079200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:6076000-6079600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:6076600-6079200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:6076800-6081000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:6077000-6080600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr10:6077000-6080600	Enhancers	Fetal Thymus	thymus
8	chr10:6077000-6083400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:6077600-6079800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:6077800-6079400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:6077800-6080200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr10:6078000-6079600	Enhancers	Primary T cells from cord blood	blood
13	chr10:6078000-6081200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr10:6078200-6080600	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:6078200-6082200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:6078800-6079200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:6078800-6079200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:6078800-6079200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:6078800-6079200	Enhancers	HMEC	breast
20	chr10:6078800-6080600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:6078800-6080800	Enhancers	GM12878-XiMat	blood
22	chr10:6078800-6082000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr10:6078800-6082200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
24	chr10:6079000-6079200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:6079000-6079400	Enhancers	Primary B cells from cord blood	blood
26	chr10:6079000-6079400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
27	chr10:6079000-6079600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:6079000-6080200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr10:6079000-6080600	Enhancers	Thymus	Thymus

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