Variant report

Variant	rs12722527
Chromosome Location	chr10:6077328-6077329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6077154..6078797-chr10:6082594..6084607,2	K562	blood:
2	chr10:6076656..6079069-chr10:6086121..6089076,2	MCF-7	breast:
3	chr10:6070515..6072335-chr10:6076874..6078701,2	K562	blood:
4	chr10:6076770..6078831-chr10:6080611..6082982,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11256416	0.99[ASN][1000 genomes]
rs11597237	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12722489	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12722515	0.87[CEU][hapmap];0.82[CHB][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12722523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12722551	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12722553	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12722559	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12722561	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12722574	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs12722588	0.88[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs17147986	0.94[CEU][hapmap];0.85[AMR][1000 genomes]
rs2246031	0.94[CEU][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41294671	0.85[AMR][1000 genomes]
rs41294713	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4625363	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4747837	0.84[EUR][1000 genomes]
rs764851	0.85[AMR][1000 genomes]
rs7900385	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7900744	0.85[CHB][hapmap]
rs791590	0.94[CEU][hapmap];0.84[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs791593	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:6066800-6078000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:6070200-6077800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:6070400-6077600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:6073000-6077800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:6075000-6078600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:6075400-6079200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:6075800-6078800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:6075800-6079000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:6076000-6079000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr10:6076000-6079600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:6076600-6079200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:6076800-6081000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:6077000-6080600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:6077000-6080600	Enhancers	Fetal Thymus	thymus
16	chr10:6077000-6083400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:6077200-6077400	Enhancers	Right Ventricle	heart

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