Variant report

Variant	rs17147986
Chromosome Location	chr10:6038478-6038479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11591302	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12722489	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs12722515	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs12722523	0.85[AMR][1000 genomes]
rs12722527	0.94[CEU][hapmap];0.85[AMR][1000 genomes]
rs12722551	0.88[AMR][1000 genomes]
rs12722553	0.87[CEU][hapmap];0.88[AMR][1000 genomes]
rs12722559	0.96[AMR][1000 genomes]
rs12722561	0.94[CEU][hapmap];0.88[AMR][1000 genomes]
rs2246031	0.87[CEU][hapmap]
rs41294671	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4625363	0.88[AMR][1000 genomes]
rs4747837	0.92[AMR][1000 genomes]
rs764851	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7900385	1.00[AMR][1000 genomes]
rs791590	0.87[CEU][hapmap]
rs8177576	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17147986	ANKRD16	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6026400-6041200	Weak transcription	Pancreas	Pancrea
2	chr10:6038200-6038600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:6038200-6039200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:6038400-6039000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr10:6038400-6039200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:6038400-6039200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:6038400-6039600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:6038400-6040000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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