Variant report

Variant	rs764851
Chromosome Location	chr10:6047944-6047945
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6045037..6047969-chr10:6050387..6052684,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11591302	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12722489	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12722515	1.00[CHB][hapmap]
rs12722523	0.85[AMR][1000 genomes]
rs12722527	0.81[CHB][hapmap];0.85[AMR][1000 genomes]
rs12722551	0.88[AMR][1000 genomes]
rs12722553	0.88[AMR][1000 genomes]
rs12722559	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12722561	0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12722574	0.81[CHB][hapmap]
rs12722588	0.81[CHB][hapmap]
rs17147986	0.90[CHB][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2104286	0.81[CHB][hapmap]
rs2246031	0.81[CHB][hapmap]
rs3118475	1.00[AFR][1000 genomes]
rs41294671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41295055	1.00[AFR][1000 genomes]
rs41295077	1.00[AFR][1000 genomes]
rs41295079	1.00[AFR][1000 genomes]
rs41295105	1.00[AFR][1000 genomes]
rs4625363	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4747837	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7900385	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs791590	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6044000-6053000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:6044000-6055800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:6047200-6048000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:6047200-6048000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:6047400-6048400	Enhancers	K562	blood
6	chr10:6047600-6048000	Flanking Active TSS	Ovary	ovary
7	chr10:6047800-6048200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:6047800-6048200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr10:6047800-6048200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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