Variant report

Variant	rs41294671
Chromosome Location	chr10:6049797-6049798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11591302	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12722489	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12722523	0.85[AMR][1000 genomes]
rs12722527	0.85[AMR][1000 genomes]
rs12722551	0.88[AMR][1000 genomes]
rs12722553	0.88[AMR][1000 genomes]
rs12722559	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12722561	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17147986	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3118475	1.00[AFR][1000 genomes]
rs41295055	1.00[AFR][1000 genomes]
rs41295077	1.00[AFR][1000 genomes]
rs41295079	1.00[AFR][1000 genomes]
rs41295105	1.00[AFR][1000 genomes]
rs4625363	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4747837	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs764851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900385	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6044000-6053000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:6044000-6055800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:6048200-6050400	Weak transcription	Ovary	ovary
4	chr10:6048400-6055800	Weak transcription	K562	blood
5	chr10:6049600-6049800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:6049600-6053000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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