Variant report

Variant	rs11597268
Chromosome Location	chr10:93448996-93448997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93444389..93447006-chr10:93448004..93451081,3	K562	blood:
2	chr10:93444232..93446401-chr10:93448282..93451081,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11591329	0.82[ASN][1000 genomes]
rs11591524	0.82[ASN][1000 genomes]
rs11592805	0.80[ASN][1000 genomes]
rs11592842	0.82[ASN][1000 genomes]
rs1418164	0.82[ASN][1000 genomes]
rs1418165	0.81[ASN][1000 genomes]
rs2039973	0.81[ASN][1000 genomes]
rs2039974	0.81[ASN][1000 genomes]
rs4144399	0.82[ASN][1000 genomes]
rs4531370	0.81[ASN][1000 genomes]
rs56111545	0.82[ASN][1000 genomes]
rs57762415	0.81[ASN][1000 genomes]
rs58485305	0.81[ASN][1000 genomes]
rs59065354	0.81[ASN][1000 genomes]
rs59474225	0.81[ASN][1000 genomes]
rs7067679	0.82[ASN][1000 genomes]
rs7067694	0.82[ASN][1000 genomes]
rs7067882	0.82[ASN][1000 genomes]
rs7068311	0.82[ASN][1000 genomes]
rs7068403	0.82[ASN][1000 genomes]
rs7077513	0.82[ASN][1000 genomes]
rs7083631	0.82[ASN][1000 genomes]
rs7096671	0.82[ASN][1000 genomes]
rs73323962	0.82[ASN][1000 genomes]
rs73323974	0.81[ASN][1000 genomes]
rs73323992	0.81[ASN][1000 genomes]
rs73323996	0.84[ASN][1000 genomes]
rs73323998	0.81[ASN][1000 genomes]
rs73324002	0.81[ASN][1000 genomes]
rs73325905	0.81[ASN][1000 genomes]
rs73325906	0.81[ASN][1000 genomes]
rs74151714	0.82[ASN][1000 genomes]
rs7917457	0.82[ASN][1000 genomes]
rs9663682	0.81[ASN][1000 genomes]
rs9665431	0.81[ASN][1000 genomes]
rs9665459	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11597268	TNKS2-AS1	cis	Thyroid	GTEx
rs11597268	TNKS2	cis	Nerve Tibial	GTEx
rs11597268	TNKS2	cis	Thyroid	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
3	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
4	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
5	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:93444000-93449400	Weak transcription	HSMM	muscle
7	chr10:93444200-93449000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:93444400-93449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:93444400-93449800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:93444600-93449600	Weak transcription	Osteobl	bone
11	chr10:93445000-93449400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:93445000-93449600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:93445000-93449600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:93445000-93449600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:93445000-93449600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:93445000-93449600	Weak transcription	NHDF-Ad	bronchial
17	chr10:93445000-93449600	Weak transcription	NHLF	lung
18	chr10:93447200-93451600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:93447400-93452000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:93448000-93449400	Weak transcription	HMEC	breast
21	chr10:93448000-93449400	Weak transcription	NHEK	skin
22	chr10:93448800-93449800	Enhancers	Liver	Liver
23	chr10:93448800-93450200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:93448800-93450200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:93448800-93452000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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