Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10904168	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11252252	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11252260	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252275	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12769283	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1540989	0.91[EUR][1000 genomes]
rs1540990	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1540991	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1540992	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2031576	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2031577	0.91[EUR][1000 genomes]
rs2148195	0.91[EUR][1000 genomes]
rs3927883	0.91[EUR][1000 genomes]
rs4364956	0.93[EUR][1000 genomes]
rs4881271	0.91[EUR][1000 genomes]
rs6601792	0.91[EUR][1000 genomes]
rs6601793	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6601794	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67567624	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7073584	0.93[EUR][1000 genomes]
rs7075855	0.87[EUR][1000 genomes]
rs7094872	0.89[EUR][1000 genomes]
rs7098303	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7917771	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407996	chr10:4054377-4056925	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4043400-4055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4047400-4055800	Weak transcription	Psoas Muscle	Psoas
3	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:4051800-4055800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:4052200-4056000	Weak transcription	Fetal Heart	heart
6	chr10:4052600-4056000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:4054600-4056000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:4054800-4056000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:4054800-4056400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:4055000-4056200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:4055000-4056600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:4055200-4056200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:4055600-4055800	Enhancers	Esophagus	oesophagus
14	chr10:4055600-4055800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:4055600-4055800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:4055600-4055800	Active TSS	GM12878-XiMat	blood
17	chr10:4055600-4055800	Enhancers	HSMM	muscle
18	chr10:4055600-4056200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:4055600-4056200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:4055600-4056400	Enhancers	NHEK	skin

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