Variant report

Variant	rs7075855
Chromosome Location	chr10:4053001-4053002
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10904168	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11252252	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11252260	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11252275	0.83[EUR][1000 genomes]
rs11597838	0.87[EUR][1000 genomes]
rs12769283	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1540989	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1540990	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1540991	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1540992	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2031576	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2031577	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2148195	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3927883	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4364956	0.89[EUR][1000 genomes]
rs4881271	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6601792	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6601793	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6601794	0.87[EUR][1000 genomes]
rs67567624	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7073584	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7094872	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7098303	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7917771	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2762838	chr10:4048172-4054844	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4043400-4055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4047400-4055800	Weak transcription	Psoas Muscle	Psoas
3	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:4050800-4053200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:4051600-4053200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:4051800-4055800	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:4052000-4054400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:4052200-4056000	Weak transcription	Fetal Heart	heart
9	chr10:4052600-4056000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:4053000-4053400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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