Variant report

Variant	rs1159918
Chromosome Location	chr4:100243009-100243010
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr4:100242772-100243035	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ADH1B	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1042026	0.92[CHB][hapmap];0.87[CHD][hapmap]
rs1229966	0.92[CHB][hapmap]
rs2066701	0.92[CHB][hapmap];0.87[CHD][hapmap]
rs2070897	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2070898	0.86[ASN][1000 genomes]
rs2075633	0.92[CHB][hapmap];0.87[CHD][hapmap]
rs4147536	0.85[GIH][hapmap]
rs6810842	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3355763	chr4:100070566-100376814	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1014237	chr4:100102701-100365700	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1010988	chr4:100105463-100444445	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1000659	chr4:100117276-100444445	Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv999549	chr4:100121609-100351749	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3353320	chr4:100147870-100425701	Genic enhancers ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3394995	chr4:100147890-100425671	Enhancers Genic enhancers Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv3446139	chr4:100213459-100244162	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3387812	chr4:100232775-100261923	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1002809	chr4:100234048-100285508	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3394945	chr4:100237238-100266245	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3465817	chr4:100238736-100267823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3465818	chr4:100238736-100267823	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100233000-100244400	Weak transcription	NHDF-Ad	bronchial
2	chr4:100239200-100245000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:100239200-100245200	Weak transcription	Left Ventricle	heart
4	chr4:100240000-100243200	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr4:100240600-100244800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:100240800-100244000	Weak transcription	Psoas Muscle	Psoas
7	chr4:100241600-100245000	Weak transcription	Aorta	Aorta
8	chr4:100241800-100243200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:100242000-100245200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:100242200-100243600	Flanking Active TSS	Liver	Liver
11	chr4:100242400-100243200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:100242400-100243200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:100242400-100243400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:100242400-100243400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:100242600-100243200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:100242600-100243200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:100242600-100243200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:100242600-100243200	Enhancers	Duodenum Mucosa	Duodenum
19	chr4:100242600-100243200	Enhancers	Stomach Mucosa	stomach
20	chr4:100242600-100244400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:100242600-100244400	Weak transcription	NHLF	lung
22	chr4:100242800-100243200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr4:100242800-100243200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr4:100242800-100243200	Enhancers	Fetal Stomach	stomach
25	chr4:100242800-100243200	Enhancers	Gastric	stomach
26	chr4:100242800-100243200	Enhancers	Pancreas	Pancrea
27	chr4:100242800-100243400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr4:100242800-100243400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:100242800-100243400	Flanking Active TSS	Fetal Lung	lung
30	chr4:100242800-100243600	Flanking Active TSS	Ovary	ovary
31	chr4:100243000-100243200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr4:100243000-100243200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:100243000-100243200	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr4:100243000-100243200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:100243000-100243200	Enhancers	Lung	lung
36	chr4:100243000-100243200	Enhancers	Right Atrium	heart
37	chr4:100243000-100243200	Bivalent Enhancer	Small Intestine	intestine
38	chr4:100243000-100243400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:100243000-100243600	Active TSS	Colon Smooth Muscle	Colon

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