Variant report

Variant	rs11599620
Chromosome Location	chr10:98230349-98230350
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11594029	1.00[AFR][1000 genomes]
rs17389665	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2025453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3789955	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs4919022	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61857573	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61857628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070439	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7922811	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98228200-98230400	Enhancers	Dnd41	blood
2	chr10:98229200-98230400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:98229400-98231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98229400-98239400	Weak transcription	Right Ventricle	heart
5	chr10:98229600-98230400	Enhancers	Brain Substantia Nigra	brain
6	chr10:98229600-98230600	Enhancers	Brain Hippocampus Middle	brain
7	chr10:98229800-98230600	Enhancers	Brain Anterior Caudate	brain
8	chr10:98229800-98230600	Enhancers	Brain Cingulate Gyrus	brain
9	chr10:98229800-98230600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:98230200-98230400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr10:98230200-98230400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:98230200-98230400	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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