Variant report

Variant	rs2025453
Chromosome Location	chr10:98231449-98231450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10736110	0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs10736111	0.95[CHD][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs11188782	0.94[MEX][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs11599620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17389665	0.83[CHD][hapmap]
rs3789955	0.83[CHD][hapmap]
rs4146725	0.89[YRI][hapmap]
rs4919025	0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs61857628	0.98[ASN][1000 genomes]
rs6584077	0.87[EUR][1000 genomes]
rs6584078	0.80[EUR][1000 genomes]
rs7070439	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922811	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912487	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98229400-98239400	Weak transcription	Right Ventricle	heart
2	chr10:98230400-98247800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:98231400-98232400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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