Variant report

Variant	rs11600515
Chromosome Location	chr11:46001779-46001780
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45919268..45921220-chr11:46000248..46001826,2	MCF-7	breast:
2	chr11:46000949..46006706-chr11:46011674..46018213,17	K562	blood:
3	chr11:45985178..45989270-chr11:45998832..46003040,4	K562	blood:
4	chr11:45994869..45996498-chr11:46000981..46003078,2	K562	blood:
5	chr11:45997750..46001916-chr11:46003160..46008009,7	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10769187	1.00[YRI][hapmap]
rs12418498	0.90[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2959100	1.00[YRI][hapmap]
rs2959101	1.00[YRI][hapmap]
rs4505038	1.00[YRI][hapmap]
rs7112677	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:45982200-46002200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:45983000-46002200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:45985000-46002200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:45985400-46002600	Strong transcription	Primary B cells from cord blood	blood
8	chr11:45985800-46003800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:45987000-46004000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:45987600-46004600	Weak transcription	Gastric	stomach
11	chr11:45988400-46004400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:45991000-46004400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:45991000-46004400	Weak transcription	A549	lung
14	chr11:45991800-46003600	Weak transcription	Brain Germinal Matrix	brain
15	chr11:45992200-46004400	Weak transcription	HMEC	breast
16	chr11:45992600-46003600	Weak transcription	Fetal Brain Male	brain
17	chr11:45992800-46003600	Weak transcription	Brain Angular Gyrus	brain
18	chr11:45992800-46004200	Weak transcription	HSMM	muscle
19	chr11:45992800-46004600	Weak transcription	Fetal Kidney	kidney
20	chr11:45993000-46003600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:45993000-46004200	Weak transcription	NHLF	lung
22	chr11:45993000-46004400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:45993000-46004400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:45993000-46004400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:45993000-46004400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:45993000-46004600	Weak transcription	Esophagus	oesophagus
27	chr11:45993000-46004600	Weak transcription	Spleen	Spleen
28	chr11:45993000-46015000	Weak transcription	Psoas Muscle	Psoas
29	chr11:45993000-46017600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:45993200-46004200	Weak transcription	HUVEC	blood vessel
31	chr11:45993600-46004600	Weak transcription	Small Intestine	intestine
32	chr11:45995000-46002200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:45995200-46002000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:45995400-46002400	Weak transcription	K562	blood
35	chr11:45995400-46004000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:45996000-46002000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:45996000-46002000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:45996800-46004400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:45996800-46004400	Weak transcription	NHDF-Ad	bronchial
40	chr11:45997000-46002000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:45997200-46002000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:45997200-46002000	Strong transcription	Fetal Muscle Leg	muscle
43	chr11:45997200-46002200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:45997600-46002000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:45997800-46002600	Strong transcription	Primary B cells from peripheral blood	blood
46	chr11:45998600-46002200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:45998600-46002200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:45998800-46002400	Strong transcription	Primary T cells from cord blood	blood
49	chr11:45999000-46003800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:45999400-46002200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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