Variant report

Variant	rs7112677
Chromosome Location	chr11:46111807-46111808
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46104640..46106555-chr11:46110652..46112549,2	MCF-7	breast:

rs_ID	r²[population]
rs10769187	0.92[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11038775	0.80[CEU][hapmap]
rs11600515	1.00[YRI][hapmap]
rs11601057	0.81[EUR][1000 genomes]
rs12418498	1.00[YRI][hapmap]
rs1976182	0.82[ASN][1000 genomes]
rs2860404	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2959084	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2959100	1.00[YRI][hapmap]
rs2959101	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs4073513	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4505038	1.00[YRI][hapmap]
rs4756055	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7114506	0.83[ASN][1000 genomes]
rs7118159	0.81[CEU][hapmap]
rs7924340	0.81[CEU][hapmap]
rs7950474	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs923530	0.81[ASN][1000 genomes]
rs950105	0.81[JPT][hapmap]
rs953230	0.83[ASN][1000 genomes]

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:46071400-46118800	Weak transcription	Lung	lung
4	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
7	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
10	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
11	chr11:46086600-46112200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:46087200-46120800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:46087600-46120400	Weak transcription	HSMMtube	muscle
14	chr11:46087600-46121000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:46089600-46120400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:46092600-46112200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:46092800-46113200	Weak transcription	Small Intestine	intestine
18	chr11:46093400-46120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:46094400-46118200	Weak transcription	Ovary	ovary
20	chr11:46094400-46119600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:46094400-46120200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:46094600-46120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:46095000-46121800	Weak transcription	Fetal Intestine Small	intestine
25	chr11:46096800-46120800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:46097200-46120800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:46097200-46121200	Weak transcription	HUVEC	blood vessel
28	chr11:46097400-46120800	Weak transcription	HMEC	breast
29	chr11:46097800-46120400	Weak transcription	NHLF	lung
30	chr11:46097800-46120400	Weak transcription	Osteobl	bone
31	chr11:46097800-46121000	Weak transcription	NHEK	skin
32	chr11:46098200-46118400	Weak transcription	Psoas Muscle	Psoas
33	chr11:46098400-46121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:46098600-46120200	Weak transcription	GM12878-XiMat	blood
35	chr11:46098600-46120800	Weak transcription	Fetal Brain Female	brain
36	chr11:46099400-46117600	Weak transcription	K562	blood
37	chr11:46099400-46118400	Weak transcription	Fetal Heart	heart
38	chr11:46099600-46118600	Weak transcription	Left Ventricle	heart
39	chr11:46101200-46118200	Weak transcription	Esophagus	oesophagus
40	chr11:46101400-46119400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:46101400-46119600	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:46101400-46120200	Weak transcription	Brain Substantia Nigra	brain
43	chr11:46101600-46120800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:46102600-46121600	Weak transcription	Thymus	Thymus
45	chr11:46103600-46115800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:46103600-46121400	Weak transcription	A549	lung
47	chr11:46104200-46120800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:46104600-46120800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:46105000-46120800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:46105000-46121000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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