Variant report

Variant	rs7114506
Chromosome Location	chr11:46072286-46072287
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46063771..46065667-chr11:46071208..46072854,2	K562	blood:
2	chr11:46072230..46074389-chr11:46075339..46077454,2	MCF-7	breast:
3	chr11:46069599..46074824-chr11:46075109..46078382,5	K562	blood:
4	chr11:46072128..46074035-chr11:46085023..46087892,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1976182	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2860404	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959084	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073513	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756051	0.82[ASN][1000 genomes]
rs4756055	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7112677	0.83[ASN][1000 genomes]
rs923530	0.97[ASN][1000 genomes]
rs950105	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs953230	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:46039200-46077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:46043200-46086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:46045000-46087000	Weak transcription	Hela-S3	cervix
7	chr11:46049200-46078800	Weak transcription	Aorta	Aorta
8	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:46063000-46086400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:46063200-46073600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:46063200-46087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:46063400-46073200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:46063400-46086600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:46066200-46086800	Weak transcription	Dnd41	blood
19	chr11:46067200-46074600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:46067400-46086400	Weak transcription	Liver	Liver
21	chr11:46068000-46073600	Weak transcription	K562	blood
22	chr11:46068600-46080600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
24	chr11:46069200-46073400	Enhancers	HSMMtube	muscle
25	chr11:46070200-46073200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:46070400-46072600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:46070400-46073200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:46070400-46073200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:46070400-46073600	Enhancers	Fetal Heart	heart
30	chr11:46070400-46074000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:46070400-46074600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:46070600-46073200	Enhancers	Fetal Stomach	stomach
33	chr11:46070600-46073800	Enhancers	Colon Smooth Muscle	Colon
34	chr11:46070600-46074000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:46070600-46074400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:46070600-46074400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:46070600-46074600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr11:46070800-46072400	Enhancers	Rectal Smooth Muscle	rectum
39	chr11:46070800-46072400	Enhancers	Stomach Smooth Muscle	stomach
40	chr11:46070800-46072600	Enhancers	Fetal Brain Female	brain
41	chr11:46070800-46072800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:46070800-46073400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:46070800-46073400	Enhancers	Fetal Muscle Leg	muscle
44	chr11:46070800-46073800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr11:46070800-46073800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:46070800-46074600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr11:46070800-46074600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:46070800-46076400	Weak transcription	Spleen	Spleen
49	chr11:46070800-46096800	Weak transcription	A549	lung
50	chr11:46071000-46072600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links