Variant report

Variant	rs4756051
Chromosome Location	chr11:46055904-46055905
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46055765..46058597-chr11:46066752..46069410,2	K562	blood:
2	chr11:46049046..46050674-chr11:46054671..46056248,2	MCF-7	breast:
3	chr11:46055568..46057421-chr11:46060940..46062569,2	K562	blood:
4	chr11:46055591..46057427-chr11:46059204..46060757,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10501316	1.00[CEU][hapmap]
rs10838535	0.81[JPT][hapmap]
rs11038720	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs11038752	1.00[CEU][hapmap]
rs11038754	1.00[CEU][hapmap]
rs1125290	0.87[JPT][hapmap]
rs12364441	0.89[CEU][hapmap]
rs17725532	0.95[CEU][hapmap]
rs1976182	0.81[ASN][1000 genomes]
rs2860404	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2945999	0.81[JPT][hapmap]
rs2946003	0.87[JPT][hapmap]
rs2959084	0.89[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2959087	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2959090	0.87[JPT][hapmap]
rs2959091	0.87[JPT][hapmap]
rs2959099	0.87[JPT][hapmap]
rs4073513	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4144718	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4237660	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4756055	0.88[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs6485654	0.87[JPT][hapmap]
rs7108186	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7114506	0.82[ASN][1000 genomes]
rs7128184	0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap]
rs7926314	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap]
rs7948502	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7950336	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7950391	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs923530	0.84[ASN][1000 genomes]
rs939107	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap]
rs950105	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs953230	0.83[CHB][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
4	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:46025600-46056200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:46034400-46056000	Weak transcription	Primary B cells from cord blood	blood
7	chr11:46034800-46061800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:46035200-46061800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:46035200-46062000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:46035400-46060800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:46039200-46077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:46041000-46061400	Weak transcription	Adipose Nuclei	Adipose
14	chr11:46041000-46066200	Weak transcription	Liver	Liver
15	chr11:46041000-46071000	Weak transcription	Placenta	Placenta
16	chr11:46041200-46070800	Weak transcription	Thymus	Thymus
17	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
18	chr11:46042000-46061600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:46042000-46061600	Weak transcription	Ovary	ovary
20	chr11:46042000-46065000	Weak transcription	Pancreas	Pancrea
21	chr11:46042000-46071000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:46042000-46071000	Weak transcription	Brain Angular Gyrus	brain
23	chr11:46043200-46071000	Weak transcription	Lung	lung
24	chr11:46043200-46086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:46043600-46061800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:46043800-46062400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:46044400-46071000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:46044400-46071200	Weak transcription	Fetal Intestine Small	intestine
29	chr11:46045000-46070600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:46045000-46087000	Weak transcription	Hela-S3	cervix
31	chr11:46045600-46058000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:46048000-46070400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:46048600-46061200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:46048600-46070600	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:46048800-46060200	Weak transcription	Left Ventricle	heart
36	chr11:46048800-46063800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:46049200-46058400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:46049200-46058800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:46049200-46061400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:46049200-46071000	Weak transcription	Fetal Brain Male	brain
41	chr11:46049200-46078800	Weak transcription	Aorta	Aorta
42	chr11:46049400-46056400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:46049400-46058200	Weak transcription	Osteobl	bone
44	chr11:46049400-46058400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr11:46049400-46061600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:46049400-46061800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:46049400-46067200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:46049400-46068400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:46049400-46071000	Weak transcription	HSMM	muscle
50	chr11:46049600-46069200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links