Variant report

Variant	rs10501316
Chromosome Location	chr11:46090550-46090551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46081977..46085173-chr11:46088425..46091893,3	K562	blood:
2	chr11:46082239..46084303-chr11:46088974..46091363,2	K562	blood:
3	chr11:46088023..46090704-chr11:46099772..46102518,2	MCF-7	breast:
4	chr11:46089194..46091532-chr11:46091610..46093980,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11038708	0.90[YRI][hapmap]
rs11038716	0.82[JPT][hapmap]
rs11038739	0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs11038742	0.82[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.81[MKK][hapmap]
rs11038743	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11038752	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038765	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1125082	0.86[JPT][hapmap]
rs12364441	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365345	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12800259	0.90[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12801848	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1542724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17725532	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34396514	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4756051	1.00[CEU][hapmap]
rs7110825	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10501316	ARHGAP1	cis	parietal	SCAN

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
8	chr11:46070800-46096800	Weak transcription	A549	lung
9	chr11:46071200-46097800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:46071400-46094600	Weak transcription	Fetal Intestine Small	intestine
11	chr11:46071400-46097800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:46071400-46118800	Weak transcription	Lung	lung
14	chr11:46071800-46093800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:46072000-46092800	Weak transcription	Esophagus	oesophagus
16	chr11:46072000-46093800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:46072000-46093800	Weak transcription	Ovary	ovary
18	chr11:46072000-46093800	Weak transcription	Right Ventricle	heart
19	chr11:46072000-46093800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:46072000-46097600	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
22	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
23	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:46072200-46095200	Weak transcription	GM12878-XiMat	blood
25	chr11:46072600-46096800	Weak transcription	NH-A	brain
26	chr11:46072600-46097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:46072600-46100800	Weak transcription	Placenta	Placenta
28	chr11:46072800-46096800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:46073200-46101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:46073200-46101800	Weak transcription	Fetal Stomach	stomach
31	chr11:46073400-46093800	Weak transcription	Left Ventricle	heart
32	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:46074200-46101200	Weak transcription	Brain Substantia Nigra	brain
34	chr11:46077400-46093800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:46077600-46090800	Weak transcription	Osteobl	bone
36	chr11:46077600-46109400	Weak transcription	HepG2	liver
37	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
38	chr11:46079600-46102200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:46080600-46103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr11:46083000-46092600	Strong transcription	Primary B cells from cord blood	blood
43	chr11:46083600-46092800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:46083600-46107600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr11:46083800-46093800	Weak transcription	Fetal Lung	lung
46	chr11:46084800-46104800	Weak transcription	Fetal Brain Male	brain
47	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
48	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
49	chr11:46085400-46106000	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:46085800-46111000	Weak transcription	Placenta Amnion	Placenta Amnion

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