Variant report

Variant	rs11038765
Chromosome Location	chr11:46123497-46123498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46113459..46117369-chr11:46121468..46124057,3	MCF-7	breast:
2	chr11:46113034..46115435-chr11:46122811..46125283,2	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10501316	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11038752	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11038754	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12364441	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12365345	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798196	0.87[EUR][1000 genomes]
rs12800259	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12801848	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542724	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725532	1.00[ASN][1000 genomes]
rs34396514	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110825	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
2	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:46106400-46131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46111600-46130400	Weak transcription	Fetal Stomach	stomach
5	chr11:46112600-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:46113600-46126600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:46118800-46128200	Weak transcription	Spleen	Spleen
8	chr11:46119000-46123600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:46119000-46126600	Weak transcription	Lung	lung
10	chr11:46119000-46126600	Weak transcription	Pancreas	Pancrea
11	chr11:46119000-46128200	Weak transcription	Gastric	stomach
12	chr11:46119000-46131200	Weak transcription	Esophagus	oesophagus
13	chr11:46120400-46124800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:46121200-46126800	Weak transcription	Fetal Brain Female	brain
15	chr11:46121200-46127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:46121200-46128200	Weak transcription	Right Ventricle	heart
17	chr11:46121400-46128200	Weak transcription	HSMM	muscle
18	chr11:46121800-46126600	Weak transcription	NHEK	skin
19	chr11:46121800-46126800	Weak transcription	HUVEC	blood vessel
20	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:46122000-46124000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:46122000-46126400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:46122000-46126600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:46122000-46126600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:46122000-46126600	Weak transcription	Brain Germinal Matrix	brain
26	chr11:46122000-46126600	Weak transcription	Right Atrium	heart
27	chr11:46122000-46127000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:46122000-46127000	Weak transcription	NH-A	brain
29	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:46122200-46124200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:46122400-46126200	Weak transcription	Psoas Muscle	Psoas
32	chr11:46122400-46126600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:46122400-46126600	Weak transcription	Fetal Thymus	thymus
34	chr11:46122400-46126600	Weak transcription	NHLF	lung
35	chr11:46122400-46126800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:46122400-46129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:46122600-46124200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:46122600-46124400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:46122600-46125800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:46122600-46125800	Weak transcription	Ovary	ovary
41	chr11:46122600-46126000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:46122600-46126200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:46122600-46126200	Weak transcription	Adipose Nuclei	Adipose
44	chr11:46122600-46126400	Weak transcription	Osteobl	bone
45	chr11:46122600-46126800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:46122600-46126800	Weak transcription	Small Intestine	intestine
47	chr11:46122600-46127000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:46122600-46127600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr11:46122600-46127800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr11:46122600-46128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links