Variant report

Variant	rs12800259
Chromosome Location	chr11:46157546-46157547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10501316	0.90[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038716	0.82[JPT][hapmap]
rs11038739	0.86[JPT][hapmap]
rs11038742	0.86[JPT][hapmap]
rs11038743	1.00[JPT][hapmap]
rs11038752	0.90[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038754	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038765	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11038785	0.86[CEU][hapmap]
rs1125082	0.89[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs12364441	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12365345	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12798196	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12801848	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1542724	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17725532	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs34396514	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4396260	0.80[EUR][1000 genomes]
rs7110825	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46152800-46158200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:46156200-46158400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:46156400-46158800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:46156600-46158200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:46156600-46158400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:46156800-46158400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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