Variant report

Variant	rs7110825
Chromosome Location	chr11:46120317-46120318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46119177..46122741-chr11:46145654..46148976,3	K562	blood:
2	chr11:46107186..46109095-chr11:46118821..46122678,3	K562	blood:
3	chr11:46119783..46121665-chr11:46368000..46370502,2	K562	blood:
4	chr11:46118936..46121274-chr11:46123872..46126110,2	K562	blood:
5	chr11:46119451..46121147-chr11:46127489..46129395,2	K562	blood:
6	chr11:46115918..46118551-chr11:46119084..46120963,2	K562	blood:

Variant related genes	Relation type
ENSG00000149091	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10501316	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11038708	0.82[YRI][hapmap]
rs11038716	0.85[JPT][hapmap]
rs11038739	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs11038742	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11038743	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11038752	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11038754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11038765	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1125082	0.86[JPT][hapmap]
rs12364441	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12365345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12798196	0.87[EUR][1000 genomes]
rs12800259	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12801848	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1542724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17725532	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34396514	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
3	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:46087200-46120800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:46087600-46120400	Weak transcription	HSMMtube	muscle
6	chr11:46087600-46121000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:46089600-46120400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:46094600-46120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:46095000-46121800	Weak transcription	Fetal Intestine Small	intestine
11	chr11:46096800-46120800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:46097200-46120800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:46097200-46121200	Weak transcription	HUVEC	blood vessel
14	chr11:46097400-46120800	Weak transcription	HMEC	breast
15	chr11:46097800-46120400	Weak transcription	NHLF	lung
16	chr11:46097800-46120400	Weak transcription	Osteobl	bone
17	chr11:46097800-46121000	Weak transcription	NHEK	skin
18	chr11:46098400-46121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:46098600-46120800	Weak transcription	Fetal Brain Female	brain
20	chr11:46101600-46120800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:46102600-46121600	Weak transcription	Thymus	Thymus
22	chr11:46103600-46121400	Weak transcription	A549	lung
23	chr11:46104200-46120800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:46104600-46120800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:46105000-46120800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:46105000-46121000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:46105000-46121200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:46105000-46121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:46105200-46120600	Weak transcription	Dnd41	blood
30	chr11:46105400-46120800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:46105600-46120800	Weak transcription	HSMM	muscle
32	chr11:46105800-46120400	Weak transcription	NHDF-Ad	bronchial
33	chr11:46106400-46131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:46107000-46120400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr11:46109600-46122200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:46110200-46120800	Weak transcription	Fetal Kidney	kidney
37	chr11:46110400-46121400	Weak transcription	NH-A	brain
38	chr11:46110600-46120600	Weak transcription	Primary T cells from cord blood	blood
39	chr11:46110800-46120800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:46111600-46130400	Weak transcription	Fetal Stomach	stomach
41	chr11:46112200-46120400	Weak transcription	Placenta	Placenta
42	chr11:46112200-46121000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr11:46112200-46121200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:46112200-46121400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:46112200-46121400	Weak transcription	Hela-S3	cervix
46	chr11:46112200-46121600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:46112400-46121000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:46112600-46120800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:46112600-46120800	Weak transcription	Fetal Thymus	thymus
50	chr11:46112600-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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