Variant report

Variant	rs11038754
Chromosome Location	chr11:46077264-46077265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45937043..45939390-chr11:46074975..46077923,2	K562	blood:
2	chr11:46069599..46074824-chr11:46075109..46078382,5	K562	blood:
3	chr11:46061076..46063761-chr11:46075337..46077557,2	K562	blood:
4	chr11:46075889..46078758-chr11:46078955..46080492,2	MCF-7	breast:
5	chr11:46072230..46074389-chr11:46075339..46077454,2	MCF-7	breast:
6	chr11:46076814..46079379-chr11:46085470..46087126,2	K562	blood:

Variant related genes	Relation type
ENSG00000121680	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10501316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038716	0.85[JPT][hapmap]
rs11038739	0.88[JPT][hapmap];0.92[YRI][hapmap]
rs11038742	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11038743	0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11038752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038765	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1125082	0.86[JPT][hapmap]
rs12364441	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365345	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12800259	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12801848	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1542724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17725532	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34396514	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4756051	1.00[CEU][hapmap]
rs7110825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:46043200-46086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:46045000-46087000	Weak transcription	Hela-S3	cervix
5	chr11:46049200-46078800	Weak transcription	Aorta	Aorta
6	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:46063000-46086400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:46063200-46087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:46063400-46086600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:46066200-46086800	Weak transcription	Dnd41	blood
15	chr11:46067400-46086400	Weak transcription	Liver	Liver
16	chr11:46068600-46080600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
18	chr11:46070800-46096800	Weak transcription	A549	lung
19	chr11:46071200-46097800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:46071400-46094600	Weak transcription	Fetal Intestine Small	intestine
21	chr11:46071400-46097800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:46071400-46118800	Weak transcription	Lung	lung
24	chr11:46071800-46093800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:46072000-46079200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:46072000-46080200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:46072000-46084000	Weak transcription	Small Intestine	intestine
28	chr11:46072000-46089200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:46072000-46092800	Weak transcription	Esophagus	oesophagus
30	chr11:46072000-46093800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:46072000-46093800	Weak transcription	Ovary	ovary
32	chr11:46072000-46093800	Weak transcription	Right Ventricle	heart
33	chr11:46072000-46093800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:46072000-46097600	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
36	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
37	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
38	chr11:46072200-46089000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:46072200-46095200	Weak transcription	GM12878-XiMat	blood
40	chr11:46072600-46086400	Weak transcription	Fetal Brain Female	brain
41	chr11:46072600-46086600	Weak transcription	Adipose Nuclei	Adipose
42	chr11:46072600-46096800	Weak transcription	NH-A	brain
43	chr11:46072600-46097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:46072600-46100800	Weak transcription	Placenta	Placenta
45	chr11:46072800-46085800	Weak transcription	HMEC	breast
46	chr11:46072800-46096800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:46073000-46079600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:46073000-46084000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:46073200-46078600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr11:46073200-46079200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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