Variant report

Variant	rs7950391
Chromosome Location	chr11:46047130-46047131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46034626..46037350-chr11:46045203..46047295,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10742774	0.95[CEU][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes]
rs10769176	0.95[CEU][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10769179	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838535	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10838541	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11038716	0.90[CEU][hapmap]
rs11038720	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs11038723	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11038739	0.90[CEU][hapmap]
rs11038742	0.90[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs11038743	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11038745	0.99[ASN][1000 genomes]
rs1125290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1125291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12277800	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1996573	0.95[CEU][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs2860404	0.86[CHD][hapmap];0.87[JPT][hapmap]
rs2945997	0.87[ASN][1000 genomes]
rs2945999	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs2946001	0.91[ASN][1000 genomes]
rs2946003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2946004	0.91[ASN][1000 genomes]
rs2959084	0.87[JPT][hapmap]
rs2959087	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2959090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2959091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2959098	0.97[ASN][1000 genomes]
rs2959099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2959101	0.89[CHD][hapmap]
rs2959102	0.84[ASN][1000 genomes]
rs4073513	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs4144718	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4237659	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4237660	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4756044	0.95[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes]
rs4756045	0.82[AMR][1000 genomes]
rs4756051	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4756055	0.87[JPT][hapmap]
rs56852527	0.83[EUR][1000 genomes]
rs6485654	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108028	0.82[ASN][1000 genomes]
rs7108186	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs7128184	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7130281	0.97[ASN][1000 genomes]
rs72904370	0.83[EUR][1000 genomes]
rs7926314	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935308	0.96[ASN][1000 genomes]
rs7948502	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950336	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.99[ASN][1000 genomes]
rs939107	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs950105	0.87[JPT][hapmap]
rs953230	0.81[CHD][hapmap];0.81[JPT][hapmap]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
4	chr11:46016200-46048200	Weak transcription	Esophagus	oesophagus
5	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:46023400-46047800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:46023400-46048200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:46025600-46047400	Weak transcription	HSMMtube	muscle
9	chr11:46025600-46056200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:46026200-46055600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:46026400-46047800	Weak transcription	HSMM	muscle
12	chr11:46031400-46048400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:46032400-46048400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:46032600-46052800	Weak transcription	Fetal Lung	lung
15	chr11:46034200-46049000	Weak transcription	Fetal Kidney	kidney
16	chr11:46034400-46048200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:46034400-46056000	Weak transcription	Primary B cells from cord blood	blood
18	chr11:46034800-46061800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:46035200-46048000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:46035200-46048200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:46035200-46048200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:46035200-46048400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:46035200-46061800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:46035200-46062000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:46035400-46048400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:46035400-46060800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:46035800-46048200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:46038600-46047200	Weak transcription	Right Ventricle	heart
29	chr11:46038800-46053400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:46039200-46077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:46040200-46048000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:46040200-46048000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:46040200-46048600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:46041000-46061400	Weak transcription	Adipose Nuclei	Adipose
36	chr11:46041000-46066200	Weak transcription	Liver	Liver
37	chr11:46041000-46071000	Weak transcription	Placenta	Placenta
38	chr11:46041200-46048200	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:46041200-46051200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:46041200-46070800	Weak transcription	Thymus	Thymus
41	chr11:46041400-46048200	Weak transcription	Left Ventricle	heart
42	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
43	chr11:46041600-46048200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:46042000-46048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:46042000-46048200	Weak transcription	Brain Anterior Caudate	brain
46	chr11:46042000-46061600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:46042000-46061600	Weak transcription	Ovary	ovary
48	chr11:46042000-46065000	Weak transcription	Pancreas	Pancrea
49	chr11:46042000-46071000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:46042000-46071000	Weak transcription	Brain Angular Gyrus	brain

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