The 2.0 version of rSNPBase

Variant report

Variant rs12277800
Chromosome Location chr11:46050361-46050362
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:46001400-46070400 Weak transcription Primary hematopoietic stem cells blood
2 chr11:46002000-46056200 Weak transcription Primary T helper cells fromperipheralblood blood
3 chr11:46012800-46062800 Weak transcription GM12878-XiMat blood
4 chr11:46022000-46074600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr11:46025600-46056200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr11:46026200-46055600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr11:46032600-46052800 Weak transcription Fetal Lung lung
8 chr11:46034400-46056000 Weak transcription Primary B cells from cord blood blood
9 chr11:46034800-46061800 Weak transcription Primary T cells fromperipheralblood blood
10 chr11:46035200-46061800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr11:46035200-46062000 Weak transcription Primary T helper cells PMA-I stimulated --
12 chr11:46035400-46060800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr11:46038800-46053400 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr11:46039200-46077200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr11:46039400-46096800 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr11:46041000-46061400 Weak transcription Adipose Nuclei Adipose
17 chr11:46041000-46066200 Weak transcription Liver Liver
18 chr11:46041000-46071000 Weak transcription Placenta Placenta
19 chr11:46041200-46051200 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr11:46041200-46070800 Weak transcription Thymus Thymus
21 chr11:46041400-46086600 Weak transcription Fetal Intestine Large intestine
22 chr11:46042000-46061600 Weak transcription Brain Inferior Temporal Lobe brain
23 chr11:46042000-46061600 Weak transcription Ovary ovary
24 chr11:46042000-46065000 Weak transcription Pancreas Pancrea
25 chr11:46042000-46071000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr11:46042000-46071000 Weak transcription Brain Angular Gyrus brain
27 chr11:46042400-46052800 Weak transcription Brain Hippocampus Middle brain
28 chr11:46043200-46071000 Weak transcription Lung lung
29 chr11:46043200-46086800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr11:46043600-46061800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr11:46043800-46062400 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr11:46044400-46052400 Weak transcription Fetal Stomach stomach
33 chr11:46044400-46071000 Weak transcription Fetal Muscle Trunk muscle
34 chr11:46044400-46071200 Weak transcription Fetal Intestine Small intestine
35 chr11:46045000-46070600 Weak transcription Primary neutrophils fromperipheralblood blood
36 chr11:46045000-46087000 Weak transcription Hela-S3 cervix
37 chr11:46045200-46055800 Weak transcription Primary monocytes fromperipheralblood blood
38 chr11:46045600-46058000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr11:46045800-46055600 Weak transcription Primary T cells from cord blood blood
40 chr11:46048000-46070400 Weak transcription Primary B cells from peripheral blood blood
41 chr11:46048600-46061200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr11:46048600-46070600 Weak transcription Fetal Muscle Leg muscle
43 chr11:46048800-46052600 Weak transcription ES-WA7 Cell Line embryonic stem cell
44 chr11:46048800-46060200 Weak transcription Left Ventricle heart
45 chr11:46048800-46063800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr11:46049000-46054800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr11:46049200-46052600 Weak transcription Colon Smooth Muscle Colon
48 chr11:46049200-46052600 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr11:46049200-46052600 Weak transcription Rectal Smooth Muscle rectum
50 chr11:46049200-46053800 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015