Variant report

Variant	rs10769176
Chromosome Location	chr11:45983385-45983386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45981105..45984613-chr11:45985057..45988704,3	K562	blood:
2	chr11:45922704..45924810-chr11:45983177..45985526,2	MCF-7	breast:
3	chr11:45957153..45959424-chr11:45981539..45983603,2	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000121653	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10742774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769179	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10838533	0.80[CEU][hapmap]
rs10838535	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs10838541	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11038716	1.00[CEU][hapmap]
rs11038720	0.85[CEU][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap]
rs11038723	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038739	0.95[CEU][hapmap]
rs11038742	0.95[CEU][hapmap];0.88[TSI][hapmap]
rs11038743	0.95[CEU][hapmap]
rs1125290	0.85[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs1125291	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12277800	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1996573	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2945999	0.81[CEU][hapmap];0.80[JPT][hapmap]
rs2946003	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs2959087	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs2959090	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs2959091	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs2959099	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4144718	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4237659	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4237660	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4756044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756045	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6485654	0.95[CEU][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7108186	0.85[CEU][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap]
rs7128184	1.00[CEU][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7926314	1.00[CEU][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7948502	1.00[CEU][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7950336	0.85[CEU][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap]
rs7950391	0.95[CEU][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs884668	0.80[CEU][hapmap]
rs939107	1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45952400-45996200	Weak transcription	Stomach Mucosa	stomach
2	chr11:45953000-45988600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:45957600-45986400	Weak transcription	HMEC	breast
6	chr11:45957800-45986400	Weak transcription	NHEK	skin
7	chr11:45960400-45986600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:45968000-45985800	Weak transcription	K562	blood
10	chr11:45969800-45983400	Weak transcription	Fetal Heart	heart
11	chr11:45970400-45985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:45970600-45983400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:45970600-45986200	Weak transcription	NHLF	lung
14	chr11:45970600-45986600	Weak transcription	Pancreas	Pancrea
15	chr11:45970600-45986800	Weak transcription	HepG2	liver
16	chr11:45970800-45989200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:45970800-45990400	Weak transcription	NHDF-Ad	bronchial
18	chr11:45971000-45983400	Weak transcription	Right Ventricle	heart
19	chr11:45971000-45985800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:45971000-45986800	Weak transcription	Gastric	stomach
21	chr11:45971000-45990000	Weak transcription	Colonic Mucosa	Colon
22	chr11:45971000-45990600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:45971000-45992400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:45971200-45985200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:45971200-45986600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:45971200-45989600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:45971200-45992400	Weak transcription	Small Intestine	intestine
28	chr11:45971400-45990800	Weak transcription	HUVEC	blood vessel
29	chr11:45971600-45986600	Weak transcription	Fetal Brain Male	brain
30	chr11:45971800-45991400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:45972000-45986600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:45972000-45986800	Weak transcription	Aorta	Aorta
33	chr11:45972000-45989000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:45972200-45992400	Weak transcription	Psoas Muscle	Psoas
35	chr11:45972400-45983400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr11:45972600-45986600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:45972800-45986000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:45972800-45988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:45974000-45986600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:45974200-45986000	Weak transcription	Colon Smooth Muscle	Colon
41	chr11:45975000-45983600	Weak transcription	NH-A	brain
42	chr11:45975000-45985400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr11:45975000-45986800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:45975000-45989000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:45975200-45985800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:45975200-45985800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:45975200-45986400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr11:45975200-45986400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:45975200-45988600	Weak transcription	Brain Substantia Nigra	brain
50	chr11:45975200-45991600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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