Variant report

Variant	rs950105
Chromosome Location	chr11:46137422-46137423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:46137236-46138009	GM12878	blood:	n/a	n/a
2	ATF2	chr11:46137241-46138020	GM12878	blood:	n/a	n/a
3	IRF1	chr11:46136831-46137541	K562	blood:	n/a	chr11:46137484-46137496 chr11:46137484-46137495 chr11:46137485-46137499 chr11:46137484-46137497 chr11:46137483-46137497 chr11:46137485-46137495
4	NFIC	chr11:46137381-46138053	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46136566..46145134-chr11:46256772..46268048,26	K562	blood:

Variant related genes	Relation type
ENSG00000254653	TF binding region
ENSG00000263539	TF binding region
ENSG00000254639	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10838535	0.81[JPT][hapmap]
rs11038720	0.87[JPT][hapmap]
rs1125082	0.80[CEU][hapmap]
rs1125290	0.87[JPT][hapmap]
rs11601057	0.80[AFR][1000 genomes]
rs1976182	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2860404	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2945999	0.81[JPT][hapmap]
rs2946003	0.93[JPT][hapmap]
rs2959084	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2959087	0.87[JPT][hapmap];1.00[YRI][hapmap]
rs2959090	0.87[JPT][hapmap];1.00[YRI][hapmap]
rs2959091	0.87[JPT][hapmap];1.00[YRI][hapmap]
rs2959099	0.87[JPT][hapmap]
rs4073513	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4144718	0.87[JPT][hapmap];1.00[YRI][hapmap]
rs4237660	0.87[JPT][hapmap];1.00[YRI][hapmap]
rs4756051	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs4756055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485654	0.87[JPT][hapmap]
rs7107550	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7108186	0.87[JPT][hapmap]
rs7109480	1.00[CEU][hapmap]
rs7112677	0.81[JPT][hapmap]
rs7114506	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7128184	0.87[JPT][hapmap]
rs7926314	0.87[JPT][hapmap]
rs7948502	0.87[JPT][hapmap]
rs7950336	0.87[JPT][hapmap]
rs7950391	0.87[JPT][hapmap]
rs923530	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs939107	0.87[JPT][hapmap]
rs953230	0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:46127000-46139400	Weak transcription	NHEK	skin
7	chr11:46127000-46140000	Weak transcription	Osteobl	bone
8	chr11:46127000-46140800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:46127000-46140800	Weak transcription	Pancreas	Pancrea
10	chr11:46127200-46138200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:46127200-46139600	Weak transcription	Right Atrium	heart
12	chr11:46127200-46140600	Weak transcription	Small Intestine	intestine
13	chr11:46128400-46138800	Weak transcription	NHDF-Ad	bronchial
14	chr11:46128400-46139400	Weak transcription	Thymus	Thymus
15	chr11:46128600-46138200	Weak transcription	Spleen	Spleen
16	chr11:46128600-46139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:46128600-46140400	Weak transcription	Right Ventricle	heart
18	chr11:46129000-46139000	Weak transcription	NHLF	lung
19	chr11:46129000-46139600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:46129000-46140200	Weak transcription	HSMM	muscle
21	chr11:46130800-46138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:46131400-46140800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:46132200-46138400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:46133200-46138200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:46133600-46139800	Enhancers	Hela-S3	cervix
26	chr11:46134000-46140400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:46134200-46137800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:46134200-46138400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr11:46134200-46140200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:46134200-46140400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:46134400-46139000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr11:46134400-46139400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:46134400-46139400	Enhancers	Primary hematopoietic stem cells	blood
34	chr11:46134400-46139400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:46134600-46138600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:46134600-46139200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:46134800-46137600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:46134800-46137800	Weak transcription	Primary T cells from cord blood	blood
39	chr11:46134800-46137800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:46134800-46138400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:46134800-46138800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:46134800-46140400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:46135000-46137600	Weak transcription	A549	lung
44	chr11:46135000-46138800	Weak transcription	Adipose Nuclei	Adipose
45	chr11:46135000-46140400	Weak transcription	Fetal Intestine Small	intestine
46	chr11:46135400-46138200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr11:46135400-46138800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:46135400-46139200	Enhancers	Primary B cells from cord blood	blood
49	chr11:46135400-46140400	Enhancers	Fetal Heart	heart
50	chr11:46135600-46138000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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