Variant report

Variant	rs7109480
Chromosome Location	chr11:46135655-46135656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1125082	0.80[CEU][hapmap]
rs11601057	0.82[AFR][1000 genomes]
rs1976182	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2860404	0.97[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2959084	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4073513	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4756055	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107550	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7114506	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs923530	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs950105	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs953230	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:46123400-46137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr11:46127000-46135800	Weak transcription	Left Ventricle	heart
8	chr11:46127000-46139400	Weak transcription	NHEK	skin
9	chr11:46127000-46140000	Weak transcription	Osteobl	bone
10	chr11:46127000-46140800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:46127000-46140800	Weak transcription	Pancreas	Pancrea
12	chr11:46127200-46135800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:46127200-46136000	Weak transcription	Dnd41	blood
14	chr11:46127200-46138200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:46127200-46139600	Weak transcription	Right Atrium	heart
16	chr11:46127200-46140600	Weak transcription	Small Intestine	intestine
17	chr11:46128400-46138800	Weak transcription	NHDF-Ad	bronchial
18	chr11:46128400-46139400	Weak transcription	Thymus	Thymus
19	chr11:46128600-46138200	Weak transcription	Spleen	Spleen
20	chr11:46128600-46139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:46128600-46140400	Weak transcription	Right Ventricle	heart
22	chr11:46129000-46139000	Weak transcription	NHLF	lung
23	chr11:46129000-46139600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:46129000-46140200	Weak transcription	HSMM	muscle
25	chr11:46129200-46136200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:46129600-46136000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:46130800-46135800	Weak transcription	Brain Substantia Nigra	brain
28	chr11:46130800-46138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:46131400-46136000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:46131400-46140800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:46132200-46138400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:46133200-46138200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:46133600-46139800	Enhancers	Hela-S3	cervix
34	chr11:46133800-46135800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:46134000-46140400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:46134200-46136600	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr11:46134200-46136800	Enhancers	Brain Anterior Caudate	brain
38	chr11:46134200-46137400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr11:46134200-46137800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:46134200-46138400	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr11:46134200-46140200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr11:46134200-46140400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr11:46134400-46137400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:46134400-46139000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr11:46134400-46139400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:46134400-46139400	Enhancers	Primary hematopoietic stem cells	blood
47	chr11:46134400-46139400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:46134600-46135800	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:46134600-46136800	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr11:46134600-46138600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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