Variant report

Variant	rs11600861
Chromosome Location	chr11:87315494-87315495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:87315328-87315513	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr11:87315395-87315530	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RNU6-1135P	TF binding region

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1010309	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10501641	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10501642	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751172	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792974	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10792975	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792976	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792977	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898739	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10898742	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10898747	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898753	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898754	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235191	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11235193	0.91[EUR][1000 genomes]
rs11235200	0.92[EUR][1000 genomes]
rs11235201	0.92[EUR][1000 genomes]
rs11235204	0.91[EUR][1000 genomes]
rs11235221	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11235224	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11235225	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11235237	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235241	0.86[EUR][1000 genomes]
rs11235245	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235246	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11494293	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11494294	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11512889	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601376	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11604094	0.94[EUR][1000 genomes]
rs11826467	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826902	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828839	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278728	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291846	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291918	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293810	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361220	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12362801	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364147	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150418	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17760207	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17760471	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1880116	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1987361	1.00[JPT][hapmap]
rs2187330	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212948	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2212949	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2375040	0.91[EUR][1000 genomes]
rs2375041	0.91[EUR][1000 genomes]
rs2375042	0.91[EUR][1000 genomes]
rs28370470	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28702774	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28795771	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245435	0.94[EUR][1000 genomes]
rs4278537	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4284412	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4338554	0.91[EUR][1000 genomes]
rs4414247	0.91[EUR][1000 genomes]
rs4438065	0.91[EUR][1000 genomes]
rs4463871	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536254	0.94[EUR][1000 genomes]
rs4548644	0.91[EUR][1000 genomes]
rs4558186	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598694	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4622295	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4627108	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641508	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943986	0.88[EUR][1000 genomes]
rs4943987	0.94[EUR][1000 genomes]
rs4944711	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4944712	0.90[EUR][1000 genomes]
rs4944715	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4944721	0.94[EUR][1000 genomes]
rs4944723	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4944724	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4944725	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5010075	0.93[EUR][1000 genomes]
rs6592386	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6592387	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6592393	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6592394	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6592397	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592402	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67701569	0.94[EUR][1000 genomes]
rs7105478	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7114247	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121065	0.94[EUR][1000 genomes]
rs7124539	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7124569	0.91[EUR][1000 genomes]
rs7126228	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7126694	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7127253	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72965616	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72965688	0.94[EUR][1000 genomes]
rs72967546	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72967550	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7924614	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7924814	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7927078	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7929162	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7930759	0.96[EUR][1000 genomes]
rs7930765	0.94[EUR][1000 genomes]
rs7930820	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7931538	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7931854	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7934337	0.94[EUR][1000 genomes]
rs7936294	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7940053	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7944286	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7944779	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947181	0.93[EUR][1000 genomes]
rs7947777	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949528	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9795164	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv898075	chr11:87278074-87375119	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	esv2760195	chr11:87295119-87329156	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv555715	chr11:87307553-87349407	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87314600-87315600	Enhancers	Aorta	Aorta
2	chr11:87314600-87315600	Enhancers	Psoas Muscle	Psoas
3	chr11:87314600-87315800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:87314600-87315800	Enhancers	HMEC	breast
5	chr11:87314800-87315600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:87314800-87315600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:87314800-87315600	Enhancers	NHEK	skin
8	chr11:87315000-87315600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:87315000-87315600	Enhancers	Pancreas	Pancrea
10	chr11:87315000-87315800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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