Variant report

Variant	rs17760471
Chromosome Location	chr11:87378183-87378184
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10501642	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10751172	0.80[EUR][1000 genomes]
rs10792975	0.80[EUR][1000 genomes]
rs10792976	0.80[EUR][1000 genomes]
rs10898753	0.80[EUR][1000 genomes]
rs10898754	0.80[EUR][1000 genomes]
rs11235245	0.82[AMR][1000 genomes]
rs11600861	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11826467	0.80[EUR][1000 genomes]
rs11826902	0.80[EUR][1000 genomes]
rs11828839	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12278728	0.80[EUR][1000 genomes]
rs12291846	0.80[EUR][1000 genomes]
rs12362801	0.80[EUR][1000 genomes]
rs17150418	0.80[EUR][1000 genomes]
rs2187330	1.00[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs4463871	0.80[EUR][1000 genomes]
rs4627108	0.80[EUR][1000 genomes]
rs7126694	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17760471	CREBZF	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87376800-87378200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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