Variant report

Variant	rs11601702
Chromosome Location	chr11:101538691-101538692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10791501	0.81[EUR][1000 genomes]
rs10791502	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11600247	1.00[ASN][1000 genomes]
rs11603508	1.00[ASN][1000 genomes]
rs11603928	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603969	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605037	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605091	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607633	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796679	1.00[ASN][1000 genomes]
rs17675774	1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676029	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17743562	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17743713	1.00[ASN][1000 genomes]
rs17744964	1.00[ASN][1000 genomes]
rs17745205	1.00[ASN][1000 genomes]
rs1938838	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938839	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938851	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939431	1.00[ASN][1000 genomes]
rs1939446	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939450	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4254048	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4457714	1.00[CHB][hapmap]
rs4469857	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4474404	1.00[ASN][1000 genomes]
rs4553341	1.00[ASN][1000 genomes]
rs4597037	1.00[ASN][1000 genomes]
rs4754765	1.00[ASN][1000 genomes]
rs4754768	1.00[ASN][1000 genomes]
rs4754769	1.00[ASN][1000 genomes]
rs56829971	1.00[ASN][1000 genomes]
rs60385781	1.00[ASN][1000 genomes]
rs61915443	1.00[ASN][1000 genomes]
rs61915444	1.00[ASN][1000 genomes]
rs61915445	1.00[ASN][1000 genomes]
rs61916052	1.00[ASN][1000 genomes]
rs61916053	1.00[ASN][1000 genomes]
rs61916054	1.00[ASN][1000 genomes]
rs61916055	1.00[ASN][1000 genomes]
rs61916056	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61917405	1.00[ASN][1000 genomes]
rs61918162	1.00[ASN][1000 genomes]
rs61918163	1.00[ASN][1000 genomes]
rs61918373	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918375	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918376	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918413	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6590880	1.00[CHB][hapmap]
rs6590881	1.00[CHB][hapmap]
rs6590882	1.00[CHB][hapmap]
rs6590886	1.00[ASN][1000 genomes]
rs7112255	1.00[CHB][hapmap]
rs7115426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7116268	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116748	1.00[ASN][1000 genomes]
rs7131328	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72976319	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925662	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs7931676	1.00[CHB][hapmap]
rs7943559	1.00[ASN][1000 genomes]
rs7949939	1.00[ASN][1000 genomes]
rs7950828	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2761704	chr11:101514325-101559016	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv461	chr11:101534107-101584004	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11601702	TRPC6	cis	multi-tissue	Pritchard
rs11601702	TRPC6	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101537800-101539000	Enhancers	Fetal Lung	lung

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