Variant report

Variant	rs1939450
Chromosome Location	chr11:101505459-101505460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10791501	0.84[EUR][1000 genomes]
rs10791502	0.84[EUR][1000 genomes]
rs11601702	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11603928	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11603969	0.84[EUR][1000 genomes]
rs11605037	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11605091	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11606855	0.84[EUR][1000 genomes]
rs11607633	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17675774	0.84[EUR][1000 genomes]
rs17676029	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17743562	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1938838	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1938839	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1938851	0.98[EUR][1000 genomes]
rs1939446	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4553341	0.82[EUR][1000 genomes]
rs4597037	0.83[EUR][1000 genomes]
rs4754765	0.81[EUR][1000 genomes]
rs4754769	0.81[EUR][1000 genomes]
rs61916053	0.81[EUR][1000 genomes]
rs61916054	0.81[EUR][1000 genomes]
rs61916055	0.83[EUR][1000 genomes]
rs61916056	0.84[EUR][1000 genomes]
rs61918373	0.85[EUR][1000 genomes]
rs61918375	0.85[EUR][1000 genomes]
rs61918376	0.85[EUR][1000 genomes]
rs61918413	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6590886	0.83[EUR][1000 genomes]
rs7115426	0.83[EUR][1000 genomes]
rs7116748	0.81[EUR][1000 genomes]
rs7131328	0.80[EUR][1000 genomes]
rs72976319	0.84[EUR][1000 genomes]
rs7943559	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101503600-101506200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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