Variant report

Variant	rs11602509
Chromosome Location	chr11:17773586-17773587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17768263..17770539-chr11:17771638..17773890,2	MCF-7	breast:
2	chr11:17768773..17771131-chr11:17771902..17774873,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10741732	0.83[ASN][1000 genomes]
rs10741733	0.98[ASN][1000 genomes]
rs10766427	1.00[ASN][1000 genomes]
rs10766428	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766429	0.83[ASN][1000 genomes]
rs10766430	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766432	0.83[ASN][1000 genomes]
rs10766434	0.83[ASN][1000 genomes]
rs10832855	0.91[ASN][1000 genomes]
rs10832856	1.00[ASN][1000 genomes]
rs10832857	1.00[ASN][1000 genomes]
rs1548564	0.83[ASN][1000 genomes]
rs1548565	0.83[ASN][1000 genomes]
rs1989452	1.00[ASN][1000 genomes]
rs2107580	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2158478	0.83[ASN][1000 genomes]
rs2237953	0.89[ASN][1000 genomes]
rs2299635	0.98[ASN][1000 genomes]
rs2299636	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299637	1.00[ASN][1000 genomes]
rs3781949	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6486397	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757514	0.83[ASN][1000 genomes]
rs7941164	0.84[ASN][1000 genomes]
rs7943186	0.84[ASN][1000 genomes]
rs7946133	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1038119	chr11:17744915-17794577	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv467718	chr11:17744992-17809724	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv553589	chr11:17744992-17809724	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv1793678	chr11:17745099-17786436	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv516767	chr11:17758587-17809724	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17763400-17779600	Weak transcription	Brain Germinal Matrix	brain
2	chr11:17764000-17780000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:17768400-17775000	Enhancers	Fetal Muscle Leg	muscle
4	chr11:17769200-17778800	Weak transcription	Fetal Brain Female	brain
5	chr11:17770600-17774400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:17771200-17774200	Enhancers	Psoas Muscle	Psoas
7	chr11:17771200-17782200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:17771600-17774200	Enhancers	Liver	Liver
9	chr11:17771800-17774400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:17772400-17786800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:17772400-17790600	Weak transcription	Right Atrium	heart
12	chr11:17773400-17773600	Enhancers	Fetal Brain Male	brain
13	chr11:17773400-17773600	Bivalent Enhancer	Fetal Intestine Large	intestine
14	chr11:17773400-17774400	Bivalent Enhancer	HepG2	liver
15	chr11:17773400-17776000	Weak transcription	Brain Angular Gyrus	brain
16	chr11:17773400-17795600	Weak transcription	Brain Hippocampus Middle	brain

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