Variant report

Variant	rs3781949
Chromosome Location	chr11:17769218-17769219
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17762630..17764298-chr11:17768234..17770289,2	MCF-7	breast:
2	chr11:17764908..17766462-chr11:17767114..17769351,2	K562	blood:
3	chr11:17768263..17770539-chr11:17771638..17773890,2	MCF-7	breast:
4	chr11:17768773..17771131-chr11:17771902..17774873,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1012105	0.96[ASN][1000 genomes]
rs10741732	0.91[ASN][1000 genomes]
rs10766426	0.98[ASN][1000 genomes]
rs10766428	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10766429	0.91[ASN][1000 genomes]
rs10766432	0.91[ASN][1000 genomes]
rs10766434	0.91[ASN][1000 genomes]
rs10832855	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11602509	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1548564	0.91[ASN][1000 genomes]
rs1548565	0.91[ASN][1000 genomes]
rs17718902	0.87[ASN][1000 genomes]
rs17792092	0.87[ASN][1000 genomes]
rs2158478	0.91[ASN][1000 genomes]
rs2237953	0.83[ASN][1000 genomes]
rs2299636	0.82[EUR][1000 genomes]
rs6486397	0.82[EUR][1000 genomes]
rs757514	0.91[ASN][1000 genomes]
rs7941164	0.92[ASN][1000 genomes]
rs7943186	0.92[ASN][1000 genomes]
rs7946133	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1038119	chr11:17744915-17794577	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv467718	chr11:17744992-17809724	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv553589	chr11:17744992-17809724	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv1793678	chr11:17745099-17786436	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv521511	chr11:17749028-17771487	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv516767	chr11:17758587-17809724	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17757000-17771800	Weak transcription	Right Atrium	heart
2	chr11:17763400-17779600	Weak transcription	Brain Germinal Matrix	brain
3	chr11:17764000-17780000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:17765000-17769800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:17766800-17771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:17768400-17771600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:17768400-17775000	Enhancers	Fetal Muscle Leg	muscle
8	chr11:17768600-17770600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr11:17769000-17769400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr11:17769200-17778800	Weak transcription	Fetal Brain Female	brain

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