Variant report

Variant	rs116030179
Chromosome Location	chr3:121410009-121410010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv432480	chr3:121355723-121629928	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv432482	chr3:121364236-121629634	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv432481	chr3:121364236-121637178	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv829703	chr3:121383290-121534493	Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv980073	chr3:121409447-121412574	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121380600-121413800	Weak transcription	Stomach Mucosa	stomach
2	chr3:121386600-121447200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:121396800-121435600	Weak transcription	Psoas Muscle	Psoas
4	chr3:121399000-121415400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:121399000-121425400	Weak transcription	Pancreas	Pancrea
6	chr3:121399000-121426400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:121399000-121440400	Weak transcription	K562	blood
8	chr3:121399200-121410200	Weak transcription	Thymus	Thymus
9	chr3:121399200-121410600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:121399200-121410800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:121399200-121416800	Weak transcription	Fetal Stomach	stomach
12	chr3:121400800-121410800	Weak transcription	Brain Substantia Nigra	brain
13	chr3:121400800-121411200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:121401200-121410200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:121401200-121410600	Weak transcription	Fetal Brain Male	brain
16	chr3:121401200-121410800	Weak transcription	Lung	lung
17	chr3:121401200-121416800	Weak transcription	Spleen	Spleen
18	chr3:121401200-121429400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:121401200-121434000	Weak transcription	Gastric	stomach
20	chr3:121403800-121414600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:121404000-121432800	Weak transcription	Brain Angular Gyrus	brain
22	chr3:121406200-121410200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:121407400-121429400	Weak transcription	Esophagus	oesophagus
24	chr3:121408200-121417400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:121408200-121422400	Strong transcription	Placenta	Placenta
26	chr3:121408200-121428400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:121408400-121411400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:121408400-121413000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:121408400-121421000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:121408400-121421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:121408600-121410800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:121408600-121411000	Strong transcription	Fetal Kidney	kidney
33	chr3:121408600-121411400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:121408600-121411400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:121408600-121411400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:121408600-121411400	Strong transcription	Aorta	Aorta
37	chr3:121408600-121411400	Strong transcription	Fetal Lung	lung
38	chr3:121408600-121411400	Strong transcription	Fetal Muscle Leg	muscle
39	chr3:121408600-121411400	Strong transcription	Ovary	ovary
40	chr3:121408600-121411400	Strong transcription	HUVEC	blood vessel
41	chr3:121408600-121411400	Strong transcription	NHLF	lung
42	chr3:121408600-121411600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:121408600-121411600	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:121408600-121411600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:121408600-121411600	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr3:121408600-121411800	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr3:121408600-121411800	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr3:121408600-121412000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:121408600-121412000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr3:121408600-121412000	Strong transcription	Primary T helper cells PMA-I stimulated	--

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