Variant report

Variant	rs11604792
Chromosome Location	chr11:107180561-107180562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1046094	0.82[AMR][1000 genomes]
rs1046095	0.82[AMR][1000 genomes]
rs10749893	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10749894	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10749895	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10749896	0.81[AMR][1000 genomes]
rs10749897	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10749899	0.82[ASN][1000 genomes]
rs10749901	0.81[AMR][1000 genomes]
rs10789593	0.80[AMR][1000 genomes]
rs10789594	0.82[AMR][1000 genomes]
rs10789597	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10789598	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10789599	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10789600	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10789601	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789602	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10789603	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10789605	0.80[ASN][1000 genomes]
rs10789606	0.80[ASN][1000 genomes]
rs10789607	0.81[AMR][1000 genomes]
rs10789608	0.81[AMR][1000 genomes]
rs10789610	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10789611	0.81[AMR][1000 genomes]
rs10789612	0.81[AMR][1000 genomes]
rs10789614	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10789615	0.81[AMR][1000 genomes]
rs10789616	0.81[AMR][1000 genomes]
rs10890695	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10890696	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10890697	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10890698	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890699	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10890700	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890701	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10890702	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890703	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890704	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10890705	0.81[AMR][1000 genomes]
rs10890706	0.84[AMR][1000 genomes]
rs10890707	0.81[AMR][1000 genomes]
rs10890708	0.81[AMR][1000 genomes]
rs10890711	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10890712	0.81[AMR][1000 genomes]
rs10890715	0.81[AMR][1000 genomes]
rs10890716	0.81[AMR][1000 genomes]
rs10890718	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10890719	0.81[ASN][1000 genomes]
rs10890720	0.81[ASN][1000 genomes]
rs10890721	0.81[ASN][1000 genomes]
rs11212132	0.82[AMR][1000 genomes]
rs11212138	0.82[AMR][1000 genomes]
rs11212141	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11212142	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11212143	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11212150	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11212153	0.81[AMR][1000 genomes]
rs11212156	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11212157	0.81[AMR][1000 genomes]
rs11212158	0.82[AMR][1000 genomes]
rs11212159	0.82[AMR][1000 genomes]
rs11212160	0.82[AMR][1000 genomes]
rs11212162	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11212164	0.82[AMR][1000 genomes]
rs11604771	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11604836	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12146472	0.81[AMR][1000 genomes]
rs12146473	0.81[AMR][1000 genomes]
rs12270655	0.81[AMR][1000 genomes]
rs12273125	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12285607	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12286394	0.89[ASN][1000 genomes]
rs12290112	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1490945	0.82[AMR][1000 genomes]
rs1490947	0.86[ASN][1000 genomes]
rs1843	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2046903	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2355840	0.82[AMR][1000 genomes]
rs3758911	0.82[AMR][1000 genomes]
rs4387327	0.81[AMR][1000 genomes]
rs55837508	0.81[AMR][1000 genomes]
rs56753250	0.80[ASN][1000 genomes]
rs59525924	0.81[ASN][1000 genomes]
rs6588964	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6588965	0.82[AMR][1000 genomes]
rs7131522	0.82[AMR][1000 genomes]
rs7358308	0.81[ASN][1000 genomes]
rs999984	0.81[ASN][1000 genomes]
rs999985	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898364	chr11:106944975-107285636	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv832260	chr11:106975094-107181795	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv556279	chr11:107006900-107186896	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1035911	chr11:107020991-107198181	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv832261	chr11:107145901-107321562	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv898374	chr11:107156880-107263130	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv556280	chr11:107158740-107231605	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107153000-107191400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:107163000-107181800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:107163000-107191200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:107163200-107191000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:107163200-107191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:107163200-107191400	Weak transcription	Brain Substantia Nigra	brain
7	chr11:107163200-107191600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:107163200-107194000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:107163600-107192000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:107163800-107186400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:107163800-107199000	Weak transcription	K562	blood
12	chr11:107164200-107191200	Weak transcription	Fetal Thymus	thymus
13	chr11:107164400-107191600	Weak transcription	Esophagus	oesophagus
14	chr11:107165200-107184200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:107165200-107191200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:107165200-107191200	Weak transcription	Fetal Stomach	stomach
17	chr11:107165200-107191200	Weak transcription	Pancreas	Pancrea
18	chr11:107165200-107191400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:107165400-107181600	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:107165400-107191200	Weak transcription	Lung	lung
21	chr11:107165400-107191600	Weak transcription	Thymus	Thymus
22	chr11:107165400-107193600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:107165600-107190400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:107165600-107191200	Weak transcription	Spleen	Spleen
25	chr11:107166800-107191400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:107167600-107182200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:107167600-107184000	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:107167600-107191200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:107167800-107180800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:107168800-107201000	Weak transcription	NHEK	skin
31	chr11:107169000-107181600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:107169000-107194200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:107169400-107230000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:107169600-107187200	Weak transcription	Placenta	Placenta
35	chr11:107170400-107183800	Weak transcription	Fetal Intestine Small	intestine
36	chr11:107170400-107190200	Weak transcription	Fetal Lung	lung
37	chr11:107170400-107191200	Weak transcription	Brain Anterior Caudate	brain
38	chr11:107170400-107193400	Weak transcription	Small Intestine	intestine
39	chr11:107170800-107180600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:107171600-107193200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr11:107171800-107187400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:107171800-107191200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr11:107171800-107191200	Weak transcription	Dnd41	blood
44	chr11:107172800-107204200	Weak transcription	NH-A	brain
45	chr11:107173200-107180600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:107173200-107191400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:107173600-107231400	Weak transcription	Brain Angular Gyrus	brain
48	chr11:107174000-107191600	Weak transcription	HepG2	liver
49	chr11:107175000-107183200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:107175000-107191600	Weak transcription	Fetal Kidney	kidney

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