Variant report

Variant	rs1160490
Chromosome Location	chr4:99773335-99773336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10019726	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10446681	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4401453	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4558877	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851217	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6851372	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6854056	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6855496	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99772400-99773400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:99772400-99773400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:99772400-99773400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:99772400-99773600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:99772400-99773600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:99772400-99773800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:99772800-99773600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:99772800-99773600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:99773000-99773400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:99773000-99773400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:99773000-99773400	Enhancers	HepG2	liver
12	chr4:99773000-99773400	Enhancers	HSMM	muscle
13	chr4:99773000-99773400	Enhancers	NHLF	lung
14	chr4:99773000-99773400	Enhancers	Osteobl	bone
15	chr4:99773200-99773600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr4:99773200-99773600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr4:99773200-99773800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:99773200-99773800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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